Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B20
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.058
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.31 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.54 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 114 RPHRETVCNKCLLPSSALIVSVHSFEG 34
           RPH+ TVC+K  + S  L++ + +  G
Sbjct: 174 RPHKCTVCSKTFIQSGQLVIHMRTHTG 200


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 213 PQTHYDIFTNIRTSAHRRPYSLQHEQHPRIFYSLSLKDRGKF 338
           P   +DI   +    H++ Y    E +P IF++++L+ +  F
Sbjct: 197 PSVEWDIL-GVPAERHKKYYPCCDEPYPDIFFNITLRRKTLF 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 VQISHYLQPQTHYDIFTNIRTSAHRRPYSLQHEQHPR 299
           +Q  H+LQ   H+   T ++   H RPY  Q +Q  R
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQD--HHRPYQQQQQQQQR 172


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 289 CSCCSEYGLRWADVRMF 239
           C CC E G R A V +F
Sbjct: 75  CMCCQESGEREASVSLF 91


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 515 WQGEMEVLWLEPHIWLEQPTPRPAL 441
           W    E L   P  WL  P P P+L
Sbjct: 23  WNVPAEELIHIPEHWLVYPEPNPSL 47


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 164 VARALGVSCTDIALFAATDALRYFYEHSHVSPPETILTTAR 286
           V R + V  + I +       R FY+++ V PP T  +  R
Sbjct: 474 VRRRVAVDRSGIDINEEIQRNREFYKNADVRPPFTYASLIR 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,863
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)