Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B20
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    32   0.32 
At3g27025.1 68416.m03381 expressed protein                             29   2.2  
At2g30840.1 68415.m03760 2-oxoglutarate-dependent dioxygenase, p...    28   5.2  
At1g26650.1 68414.m03245 expressed protein                             27   6.8  
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    27   9.0  
At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic ...    27   9.0  

>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 397 SANRFCSGASVQSTESAGRGVGCSSQMWGSNQSTSISPCQTIAEPPITSLRRILC 561
           S   FC+ A  +  E+ G        +WG NQ +++    + A P  T++R++ C
Sbjct: 119 SCGAFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSC 173


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +2

Query: 86  LLQTVSLCGRKVVSWSKPVSRAGMERVARALGVSCTDIA-LFAATDALR----YFYEHSH 250
           L  ++S+C  +++SW + +   G++   +  G  C+  A +F+    +R     FY H+H
Sbjct: 2   LTNSLSICVLQLLSWMRTIKPNGLDSSKKFKGGLCSLRAQVFSDVQDIRTNSFSFYGHTH 61

Query: 251 VSPPETILTTARAASEDFLFTFAEG 325
              P  +    R   ++F    A G
Sbjct: 62  DPNPSKVEQDLRFDEDEFCGFLAIG 86


>At2g30840.1 68415.m03760 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 362

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
 Frame = +2

Query: 20  EIYKAPSKLWTDTIRA--DDGKRHLLQTVSLCGRKVVSWSKPVSRAG---MERVARALGV 184
           ++Y +PS  W DT+                +CG  ++ ++K V + G    E ++ ALG+
Sbjct: 140 DLYSSPSANWRDTLSCFMAPDVPETEDLPDICGEIMLEYAKRVMKLGELIFELLSEALGL 199

Query: 185 SCTDIALFAATDALRYFYEHSHVSPPETILTTARAASEDFLF 310
           +   +     T  L     H +   PE  LT   +   D  F
Sbjct: 200 NPNHLKEMDCTKGL-LMLSHYYPPCPEPGLTFGTSPHSDRSF 240


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 575 ERLFQHRIRRNDVIGGSAIVWQGEMEVL 492
           E LF HR+++     GS+ +W+G + VL
Sbjct: 262 EGLFDHRVKKVSYGDGSSRLWEGPLLVL 289


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 369 VYLYLSVEHLGESLL*WSKRAVDRERWPRRGLLKPDVGL*PEHFH 503
           VY Y+   +LG+ L  WS+       W +R  +  DV    E+ H
Sbjct: 652 VYEYMPQGNLGQHLFEWSELGYSPLTWKQRVSIALDVARGVEYLH 696


>At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic
           subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069
           GI:5360595 from [Arabidopsis thaliana]; identical to
           cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
          Length = 387

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 141 TGLDQDTTFRPHRETVCNKCLLPSSALIVSVHSFEGALYISTRPR 7
           T L    T + + E VC+K +LP S  +     F   +  ST PR
Sbjct: 3   TALVSPLTSQLNHEAVCSKFVLPKSPFMSGSKLFSSNMPCSTVPR 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,614
Number of Sequences: 28952
Number of extensions: 260458
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)