Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B19
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    35   0.007
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    30   0.26 
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    29   0.45 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   4.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   4.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.2  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   4.2  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   7.3  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   7.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.3  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = -3

Query: 378 HSIVSLHNKPLMKSTNSQILYNALHSIRKHLSYYSISNETPYVYIYIHTSSP*VTSVLLI 199
           HS+ SL +KP++ +++S +L ++ H+  +  + Y ++ ET       + S    TS+LL+
Sbjct: 439 HSLSSLSSKPILTASSSSLLTSSSHTYERS-TVYVVTVETVSSGSSTYASQSTQTSILLV 497

Query: 198 YVLGESLCPAFTASGGFHS 142
            ++G+S     + +   HS
Sbjct: 498 -IVGDSSSTDSSGASSTHS 515


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -1

Query: 305 IQFASTYHIIPFRMKHPMYIYIYIQAVLELRQFF*-FTS*GNPFVPRLQRAGGSILSSVS 129
           I F S  + +P   K   Y+Y ++ A++ +  FF   T       P +  +      +V+
Sbjct: 153 ILFLSKLNSVPLNKKIS-YLYTFLLAIVSVLGFFTRITFLAFVIAPYIYFSVRCFKKNVN 211

Query: 128 RVWDIPTFLHVCVFVFIEMFISITAILNE 42
              DI  FLH+C+FV +     +  IL +
Sbjct: 212 NPKDI--FLHLCIFVSVSFATVLACILED 238


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 289 LIILFHFE*NTLCIYIYTYKQSLSYVSSFDLRLRGIPLSRVYSER-GVPFLA 137
           +++  H E   +C  I T+   L   S +D ++ G+PL +VY+   G+P  A
Sbjct: 36  IVVKHHEEFLKVCDIISTFTYQLD-ASIYDEKVEGVPLKQVYANSIGLPVYA 86


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -3

Query: 441 YFMENLFKLFSPLVQLQFS----IYHSIVSLHNKPLMKSTNSQILYNALHSIR 295
           YF + L K F P+++ +F      Y + +SL +  L  +   Q L N L+SI+
Sbjct: 482 YFTDVLLKWFQPIIRYEFDNALIFYKASISLVS-VLAPAAQKQFLSNYLNSIQ 533


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 320 STTHYIQFASTYHIIPFRMKHPMYIYI 240
           S TH +Q   T   + F +KHP+Y ++
Sbjct: 101 SLTHVLQQIYTTLYVEFVVKHPLYTHV 127


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 249 IHRVFHSKWNNMISACEL 302
           IHRVF   W N IS C +
Sbjct: 605 IHRVFADNWINDISMCHM 622


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 444 LYFMENLFKLFSPLVQLQFSIYHSIV 367
           L F+E  ++LF+ L+ LQFS Y  I+
Sbjct: 814 LAFLEIFYELFNCLLHLQFSKYLVII 839


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 18  SSLIHYYCLV*YGSNRN 68
           SS  H YC + YGSN N
Sbjct: 165 SSYFHPYCWIDYGSNNN 181


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 435 MENLFKLFSP-LVQLQFSIYHSIVSLHNKPLMKSTNSQILYNA 310
           ++N+  +  P L+  Q+S+  ++ S    PL+   NS  + NA
Sbjct: 60  LKNIANVLEPKLIDNQYSLIPALPSARTDPLLSQLNSLNIQNA 102


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -1

Query: 305 IQFASTYHIIPFRMKHPMYIYIYIQAVLELRQFF*FTS*GNPFVPRLQRAGGSILSSVSR 126
           I+FAST+H IPF+    +Y+ + I  V+ L  ++ +   G P    +   G  +L +  +
Sbjct: 82  IRFASTFHRIPFQF---LYLAV-IATVIILASYYGYFD-GVPAWRSVHHYGEDVLLNYIK 136

Query: 125 VWDI 114
             DI
Sbjct: 137 GCDI 140


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 340  FHKRFIMKRHDAMVY*KLKLN*WRKKFKQIL 432
            F + F+  + D + Y   KL  WRKKF+ IL
Sbjct: 3206 FLRDFVETKLDLLTYVD-KLRMWRKKFENIL 3235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,256
Number of Sequences: 5004
Number of extensions: 45407
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)