Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B19
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical p...    27   6.7  
AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical ...    27   6.7  
AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical...    27   8.9  

>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 405 LVQLQFSIYHSIVSLHNKPLMKSTNSQILYNALHSIRKHLSYYSISNETPYVYIYI 238
           L QLQ SIY  +VS+     + +   +++ N +H IRK  S ++I   T   + ++
Sbjct: 173 LTQLQ-SIYDRLVSMSRAKKINALFGKLIVNDIHQIRKAFSCFNIRTLTTIGFEFV 227


>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 320 STTHYIQFASTYHIIPFRMKHPMYIYIYI 234
           S THY QFAS   ++P      M +Y Y+
Sbjct: 273 SLTHYKQFASIIFVMPHNAFISMTLYYYL 301


>Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 279 NMISACELNVMRCRVFVSLWIS*AVYYEA---TRCYGILK 389
           N+  A +L  +RC VF++  IS +++Y A   T C G L+
Sbjct: 179 NVCYALQLGSVRCGVFIACLISVSLFYTAHWSTYCTGQLR 218


>AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 279 NMISACELNVMRCRVFVSLWIS*AVYYEA---TRCYGILK 389
           N+  A +L  +RC VF++  IS +++Y A   T C G L+
Sbjct: 179 NVCYALQLGSVRCGVFIACLISVSLFYTAHWSTYCTGQLR 218


>AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical
           protein Y47D3B.4 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +3

Query: 21  SLIHYYCLV*YGSNRNKHFNKHKNTNMQKRRDVPYSAYRAKNGTPRSL*TRDKGIPLRRK 200
           S+ H+Y L         ++ KH N  +     +P S     +G P S   R K +   R 
Sbjct: 257 SIYHFY-LTNQTHKVLDYYEKHTNLKV-----IPLSL---PSGNPNSPIERSKYLKENRP 307

Query: 201 SK---ELT*LKDCLYVYIYIHR 257
            K   EL    DC Y YI+ HR
Sbjct: 308 QKRRHELLPYNDCFYNYIHTHR 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,327
Number of Sequences: 27780
Number of extensions: 243399
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)