Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B19
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /...    28   4.7  
At2g25120.1 68415.m03005 bromo-adjacent homology (BAH) domain-co...    27   8.3  

>At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -3

Query: 369 VSLHNKPLMKSTNS--QILYNALHSI---RKHLSYYSISNET 259
           VSL  +P   S  S   I+YN LH I   R H+S Y  +N T
Sbjct: 149 VSLSKRPTTISFASCMDIVYNGLHHINSPRNHISIYGCTNAT 190


>At2g25120.1 68415.m03005 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 380

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 281 IIPFRMKHPMYIYIYIQAVLELRQFF 204
           +IPF   HP YI+I++  VL+   FF
Sbjct: 356 LIPFT--HPSYIFIFVLHVLDFYLFF 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,203
Number of Sequences: 28952
Number of extensions: 217021
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)