Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B18
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    48   2e-06
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    28   1.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   3.0  
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    27   3.0  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   3.0  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.3  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   7.0  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
 Frame = +3

Query: 48  LDHLKPAVHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQY 227
           LD   P     V I MGS +D    +  A    +F +  +L + SAH+ T + +    + 
Sbjct: 377 LDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR-TPDRMVTYART 435

Query: 228 EDTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCA 401
             + G  V IA AG +  L  +++  T  PVI  P     L  V  + S + +P G+  A
Sbjct: 436 AASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVA 495

Query: 402 TVIYPDS--AALMAAQII 449
           TV   +S  A ++A +I+
Sbjct: 496 TVAINNSQNAGILACRIL 513


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -2

Query: 305 VSGQYWSKPVRAASNGDKYE--SAMRILILLHDAKRFLRGFVS*CHSEVHVQAEVAGGFG 132
           VSG Y     R ++N + Y+      I + L D + +++G++    S + ++ + + GF 
Sbjct: 361 VSGSYLLTAARLSTNDNSYDMDDVECICVSLID-QGYIKGYIIHASSTLVLKKDPSFGFS 419

Query: 131 NFLAMLLVSRRSHKYNDF 78
              +++ ++R  H   +F
Sbjct: 420 VIESLMPIARNDHAEKEF 437


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 288 PVLSGNTSYPVINCPPPSDKLVQDIWSSLSV 380
           P   G+   P  N PPP+   + D+ SS+S+
Sbjct: 583 PPFDGDVCPPACNTPPPNYDELFDVLSSISI 613


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 294 LSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 416
           LS    YP++   PP  K   +IW     P+G  C ++++P
Sbjct: 59  LSFPQDYPLM---PPKMKFTTEIWHPNVHPNGEVCISILHP 96


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 300 GNTSYPV-INCPPPSDKLVQDIWSSLSVP 383
           G   YP  ++ PPPS K  QD W++   P
Sbjct: 467 GREEYPRRLSNPPPSQKTNQDAWTNRKRP 495


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 270 RSNGLGPVLSGNTSYPVINCPPP--SDKLVQDIWSSLSV 380
           RS  + P++  +T   VI+CPP   SD+ +Q  W ++ +
Sbjct: 40  RSTPINPIIRSDTIQLVISCPPVTYSDE-IQVPWKAIDL 77


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 353 PGYLVITLSSVRFGLCDGXLPRQCSTHGGTD 445
           PGY+++ LSS +        PR   + G T+
Sbjct: 429 PGYIILRLSSEKLSRFANDFPRMVPSMGSTE 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,926
Number of Sequences: 5004
Number of extensions: 54114
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)