Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B18
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 38 0.007
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 31 0.77
04_04_0495 - 25623562-25623775,25623902-25624004,25624129-256242... 29 2.4
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 29 3.1
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 28 5.4
06_03_1464 + 30339369-30340220 28 5.4
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250... 27 9.5
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 27 9.5
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 37.9 bits (84), Expect = 0.007
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Frame = +3
Query: 69 VHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQYEDTHGAL 248
V + I MGS +D + A + F + +L + SAH+ E R+ T
Sbjct: 455 VKPRAAIIMGSDSDLPVMKDAAVVLKKFNIPFELTIVSAHRTPE---RMYHYALSTKERG 511
Query: 249 VFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIY--P 416
+ + +AG +++ TS PVI P + L + S + +P G+ ATV
Sbjct: 512 LEVIIAG-------MVASLTSVPVIGVPIMTSSLHGTDSLLSIVQMPKGIPVATVAIGNA 564
Query: 417 DSAALMAAQIIGLQD 461
++A L+A +++ +D
Sbjct: 565 ENAGLLAVRMLASRD 579
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 27 FAWVREQLDHLKPAVHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDLRV 176
F+W+R+ K A+HH ++F A E + +A D +D V
Sbjct: 204 FSWIRKLPAETKTAIHHSKILFCNGYAFDELFPDVISSAIDCAIDAGTAV 253
>04_04_0495 -
25623562-25623775,25623902-25624004,25624129-25624231,
25624353-25624562
Length = 209
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 329 AVDDGVRRVSGQYWSKPVRAASNGDKYESAMRILILLHDAKR--FLRGFVS*CHSEVHVQ 156
+++ V V+G+Y + NG S + L++D +R +L+G++ S V
Sbjct: 82 SIESAVMYVNGRYKDTTIYITENGYSQHSDTNMEDLINDVERVNYLQGYLKYLSSAVRKG 141
Query: 155 AEVAGGF 135
A V G F
Sbjct: 142 ANVGGYF 148
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 372 LSVPSGLGC----ATVIYPDSAALMAAQIIGLQDYLIWARLR 485
+S GLGC TVI+ +A + AA +IGL Y WA R
Sbjct: 114 ISFSVGLGCLSKNGTVIF-QAAGMTAAIVIGLTCYTFWAAKR 154
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 405 VIYPDSAALMAAQIIGLQDYLIWARLRVKQL 497
V+ P +A L+A ++ +L+W RLR +L
Sbjct: 598 VVIPVAAPLLALAVVAGVSFLVWRRLRYAEL 628
>06_03_1464 + 30339369-30340220
Length = 283
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 93 MGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQ 224
+G D +Q AA D LD LR+ AH + +ET+ ++Q
Sbjct: 80 LGELLDLPEAQAALSAANDRLLDAFLRLADAHGSFQETVVALKQ 123
>10_01_0240 -
2506901-2507008,2507950-2508322,2508418-2508612,
2508771-2508885,2510027-2510132,2510253-2510366,
2510521-2510538
Length = 342
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 78 KVVIFMGSPADQEHSQKIAKAARDFGLDVDL 170
++V+F+GSP E + I K + + + +D+
Sbjct: 111 RIVVFVGSPVKDEKLETIGKKLKKYNVSLDV 141
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 503 GYSLETRRSETQKFECLSFYLATFSNIFILCLHVSVSMLSVRVC 634
GY +ET++ + CL F A +SN + SV LSV C
Sbjct: 307 GYKVETQQQRGMRRRCLVFEAAGYSNRIV--QKESVMDLSVSTC 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,565
Number of Sequences: 37544
Number of extensions: 407123
Number of successful extensions: 1106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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