Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B18
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)          129   2e-30
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                 36   0.037
SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)           31   0.79 
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)                   31   0.79 
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         30   1.4  
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)        30   1.8  
SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09)        29   3.2  
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)        28   7.4  
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  28   7.4  

>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score =  129 bits (311), Expect = 2e-30
 Identities = 61/112 (54%), Positives = 80/112 (71%)
 Frame = +3

Query: 6   LDTVKRNFAWVREQLDHLKPAVHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDLRVTSA 185
           L+ VK+N+AWV  +   L       VV+FMGS +D +H +KI  A + F +  DLRV+SA
Sbjct: 150 LEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDHCKKIEAALKSFNVPCDLRVSSA 209

Query: 186 HKATEETLRIMQQYEDTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPS 341
           HK +E+TL++++ YE     +V IAVAGRSNGLGPVLSGNTS+PVINCPP S
Sbjct: 210 HKGSEDTLKVLRVYEGQGVPIVIIAVAGRSNGLGPVLSGNTSFPVINCPPVS 261


>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   LDTVKRNFAWVREQLDHLKPAVHHKVVIFMGSPADQEH 119
           L+ VK+N+AWV  +   L       VV+FMGS +D +H
Sbjct: 240 LEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDH 277


>SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)
          Length = 271

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 21  RNFAWVREQLDHLKPAVHHKVVIFMGSPADQEHSQKIAKAARDF 152
           + F W ++   H++PA   KVVI   SPA + +S   ++   DF
Sbjct: 134 KGFYWTQKIFSHIRPA---KVVILTSSPASEYNSDDPSEIKTDF 174


>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
          Length = 380

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 583 NIRECCKVKT*TLKFLSF*SASLKAVAISSCFTLRRA 473
           N+R+C ++    LK++     +LK + IS CF+L  A
Sbjct: 114 NLRQCARITDVGLKYVGMRCQNLKIINISECFSLTDA 150


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 57  LKPAVHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDL--RVTSAHKATEETL 209
           L PA  H ++I  G       +  + K ARDF LDV L  R+++ H  +++ L
Sbjct: 34  LSPACQHLILI--GDHKQLRPNTNVYKLARDFKLDVSLFERMSTEHSGSQKRL 84


>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
          Length = 305

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 218 HDAKRFLRGFVS*CHSEVHVQAEVAGGFGNFLAMLLVSRRSHKY 87
           H+ K FLR F+  C+    +  + AG    +LA      + H Y
Sbjct: 172 HERKEFLRYFIRSCNGLARMALDTAGNIVGYLATTEAINKKHGY 215


>SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09)
          Length = 305

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 218 HDAKRFLRGFVS*CHSEVHVQAEVAGGFGNFLAMLLVSRRSHKY 87
           H+ K FLR F+  C+    +  + AG    +LA        H Y
Sbjct: 172 HERKEFLRYFIRSCNGLARMALDTAGNIVGYLATTEAINEKHGY 215


>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 218 HDAKRFLRGFVS*CHSEVHVQAEVAGGFGNFLAMLLVSRRSHKY 87
           H+ K FLR F+  C+    + ++  G    +LA        H Y
Sbjct: 172 HERKEFLRYFIRSCNGLARMASDTEGNIVGYLATTEAINEKHGY 215


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 STSRPKSRAALAIFWLCSWSAGDPINIT 83
           S++ PK +    I W CSWS  D   IT
Sbjct: 330 SSTLPKPKQHSRIIWSCSWSHDDKYFIT 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,131,562
Number of Sequences: 59808
Number of extensions: 446251
Number of successful extensions: 1258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)