Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B18
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   155   3e-38
DQ904352-1|ABI78934.1|  564|Caenorhabditis elegans malignant bra...    29   2.8  
AC024792-4|AAF60679.2|  544|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81114-1|CAB03285.1|  454|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  155 bits (376), Expect = 3e-38
 Identities = 71/152 (46%), Positives = 108/152 (71%)
 Frame = +3

Query: 81  VVIFMGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIA 260
           V++ MGS +D   ++KI+  A+ FGL+  L+V+SAHK T +TL ++  +E++    V IA
Sbjct: 271 VLVIMGSGSDGVFARKISDEAKKFGLETTLKVSSAHKTTSDTLEVIADFEESGVPTVVIA 330

Query: 261 VAGRSNGLGPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAA 440
           VAGRSNGLGPV++GN+S PVINCPPPS+    DIWSSL +P+G+GC TV+ P  AAL AA
Sbjct: 331 VAGRSNGLGPVIAGNSSLPVINCPPPSESTSLDIWSSLRMPNGIGCTTVLDPSEAALAAA 390

Query: 441 QIIGLQDYLIWARLRVKQLEMATALRLADQKL 536
           +I+   +++++ ++   QL+    +  A++KL
Sbjct: 391 KILASHNHIVFGKVLTAQLKNQINIYNANRKL 422


>DQ904352-1|ABI78934.1|  564|Caenorhabditis elegans malignant brain
           tumor repeat protein1 protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTTKSLYLWDRLLTRSIAKKLPKPPATSAWTWTSE 174
           FT + L+   R     IA+++PKP     +TW+ E
Sbjct: 35  FTEERLFYRRRNPVEKIAQRIPKPQIEGTFTWSDE 69


>AC024792-4|AAF60679.2|  544|Caenorhabditis elegans Hypothetical
           protein Y48G1A.6 protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTTKSLYLWDRLLTRSIAKKLPKPPATSAWTWTSE 174
           FT + L+   R     IA+++PKP     +TW+ E
Sbjct: 35  FTEERLFYRRRNPVEKIAQRIPKPQIEGTFTWSDE 69


>Z81114-1|CAB03285.1|  454|Caenorhabditis elegans Hypothetical
           protein T04D3.1 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +3

Query: 51  DHLKPAVHHKVVIFMGSPADQEHSQKIAKAARDFGLDVDL--RVTSAHKATEETLRIMQQ 224
           DHL P      VIFM +   QE  Q +          VD    V SA K TE +  +M +
Sbjct: 75  DHLSPMYASGSVIFMRNEVTQEVEQYVYSFETGGFQQVDYPELVYSAEKFTESSFIVMIE 134

Query: 225 YEDTHGALV 251
             D    L+
Sbjct: 135 NSDGKKVLI 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,512
Number of Sequences: 27780
Number of extensions: 323229
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)