Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B18
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    61   5e-10
At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylas...    57   9e-09
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    31   0.85 
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    31   0.85 
At1g62730.1 68414.m07080 expressed protein                             30   1.1  
At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin (...    30   1.5  
At5g02590.1 68418.m00194 chloroplast lumen common family protein...    29   2.6  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    29   3.4  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    28   6.0  
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    28   6.0  
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)...    27   7.9  
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    27   7.9  

>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
 Frame = +3

Query: 78  KVVIFMGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 257
           +V I MGS  D    +  AK    FG+  ++++ SAH+ T E +        + G  V I
Sbjct: 476 RVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVII 534

Query: 258 AVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPD--SA 425
           A AG +  L  +++  T  PVI  P  + +L  V  + S + +P G+  ATV   +  +A
Sbjct: 535 AGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNATNA 594

Query: 426 ALMAAQIIGLQDYLIWARLRVKQLEM 503
           AL+A +++G+ D  + +R+R  Q +M
Sbjct: 595 ALLAVRMLGISDTDLVSRMRQYQEDM 620


>At2g05140.1 68415.m00541 phosphoribosylaminoimidazole carboxylase
           family protein / AIR carboxylase family protein similar
           to SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profile
           PF00731: AIR carboxylase
          Length = 162

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
 Frame = +3

Query: 93  MGSPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGR 272
           MGS  D    +  AK    FG+  ++++ SAH+ T E +        + G  V IA AG 
Sbjct: 1   MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVIIAGAGG 59

Query: 273 SNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCATVIYPD--SAALMAA 440
           +  L  +++  T  PVI  P  + +L  V  + S + +P G+  ATV   +  +AAL+A 
Sbjct: 60  AAHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAV 119

Query: 441 QIIGLQDYLIWARLRVKQLEM 503
           +++G+ D  + +R+R  Q +M
Sbjct: 120 RMLGISDNDLVSRMRQYQEDM 140


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 330 PPPSDKLVQDI-WSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLIWARLRVKQLEMA 506
           PPP + LV     SS S+P   G +TV+      L     I L  Y   A+ + K  + A
Sbjct: 263 PPPRESLVSTPPISSSSLPGKSGNSTVLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTA 322

Query: 507 TALRLAD 527
           +A  + D
Sbjct: 323 SASEVGD 329


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 330 PPPSDKLVQDI-WSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLIWARLRVKQLEMA 506
           PPP + LV     SS S+P   G +TV+      L     I L  Y   A+ + K  + A
Sbjct: 263 PPPRESLVSTPPISSSSLPGKSGNSTVLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTA 322

Query: 507 TALRLAD 527
           +A  + D
Sbjct: 323 SASEVGD 329


>At1g62730.1 68414.m07080 expressed protein
          Length = 304

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/81 (24%), Positives = 30/81 (37%)
 Frame = +1

Query: 64  PRFTTKSLYLWDRLLTRSIAKKLPKPPATSAWTWTSE*HQLTKPRRKRFASCNNMRIRMX 243
           P+     L  W   + +   KK    PA  A +W    H ++KP  KR     + RIR  
Sbjct: 62  PKIGLMRLLWWQEAIDKLYTKKPINHPAAQALSWAISEHNISKPWLKRSV---DARIRDA 118

Query: 244 XXXXXXXXXXXTGLDQYCPET 306
                        L++Y  +T
Sbjct: 119 QREVDDIPESIAELEKYAEDT 139


>At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin
           (AnnAt1) [Arabidopsis thaliana] GI:4959106
          Length = 317

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 102 PADQEHSQKIAKAARDFGLDVDLRVTS-AHKATEETLRIMQQYEDTHG 242
           PA  + ++++  A   +G + DL ++  AH++ E+   I Q Y +T+G
Sbjct: 11  PAPSDDAEQLRTAFEGWGTNEDLIISILAHRSAEQRKVIRQAYHETYG 58


>At5g02590.1 68418.m00194 chloroplast lumen common family protein
           various predicted proteins, Arabidopsis thaliana
          Length = 326

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 309 SYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQI 446
           SY +++ PPPS  +    +SS   PS L    V    +AAL++A +
Sbjct: 30  SYRILHKPPPSRVIRASSFSSNPKPSFLKTTCVTLTTAAALLSASL 75


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 297 SGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCAT 404
           S + S+P  + PPPS  + Q + +S+  P   GC++
Sbjct: 235 SQHNSFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSS 270


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 12  TVKRNFAWVREQLDHLKPAVHHKVVIFMGSPADQE 116
           T  RNF W R   D++   + H V  F GS  + E
Sbjct: 372 TFCRNFQWGRYSFDYMLGTISHTVNHFNGSVTNNE 406


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  SPADQEHSQKIAKAARDFGLDVDLRVTSAHKATEETLRIMQQY 227
           SP D E  +   +   DF L  D+  T AH+  EE L +   Y
Sbjct: 831 SPYDMERLRAYTENLTDFNLVYDICKTLAHQYFEEKLPVSLSY 873


>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
           E2; identical to gi:992706
          Length = 166

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 333 PPSDKLVQDIWSSLSVPSGLGCATVIYP 416
           PP+ +   DIW     P G  C ++++P
Sbjct: 68  PPTVRFTSDIWHPNVYPDGRVCISILHP 95


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 282 LGPVLSGNTSYPVINCPPPS 341
           +GP LSGN    V+  PPPS
Sbjct: 845 MGPGLSGNVGVGVVPSPPPS 864


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,984
Number of Sequences: 28952
Number of extensions: 302281
Number of successful extensions: 779
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)