Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B16
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 1.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.5
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 4.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 5.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.7
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 7.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 7.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.5
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 7.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.9
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 25 9.9
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 9.9
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 667 TILQKKLLLPVLIILGYYCTSYPWYVLVNVRI 572
++ Q+ L+ V II + T Y WYV V +++
Sbjct: 407 SVTQEDLISKVAIISETFATDYEWYVDVTIQL 438
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 468 SPLHASSPGLPPAH 427
SPLHA+S LPP+H
Sbjct: 43 SPLHANSVSLPPSH 56
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 504 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 391
+ P++Y+R +S + A P PP + +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -3
Query: 670 ITILQKKLLLPVLIILG---YYCTSYPWYVLVN 581
+ I Q K+LL ++ + ++ +Y WY+LVN
Sbjct: 703 LCIWQPKILLGIMYVTDLVLFFLDTYLWYILVN 735
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 118 WMWNSFFYRSSNNGMCT 68
WMWNSF S NG T
Sbjct: 421 WMWNSFRGASDENGEVT 437
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 638 CSHYFRLLLYFLSMVCTRKRSY 573
CS LL+ FL+MVC+ K Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 596 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 501
V TR+R + R C +CR ++ ++P + C
Sbjct: 20 VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 619 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 470
+YC + W +N Y G + A +F+S+ S Y+ + + S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 518 GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 619
G+VS YC + PG + V+ IP+ S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.5
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = -1
Query: 573 YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA-- 400
Y P VP P P++T LP R PP S P PP S +L +SA
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSAVS 1088
Query: 399 SPPRNVLCAA*HLSLSTYGSLT 334
PP + ST LT
Sbjct: 1089 RPPIATSAGRSSTAASTSAPLT 1110
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 152 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 277
D + + +FV P CL + +T+ F ++VA W
Sbjct: 43 DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 534 P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 391
P + + + ++P S + PP S A++P LPP+ S + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535
>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 206 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 358
P C S YT Q + + WG+ + F G V + VK P V++
Sbjct: 58 PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 338
H +L G P V + +RN Q+L P TS L+LV V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,214
Number of Sequences: 5004
Number of extensions: 76529
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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