Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B16
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 33 0.16
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 29 2.6
05_03_0625 - 16325827-16326495 29 3.4
05_03_0487 + 14629678-14629789,14637563-14637687,14637898-146379... 29 3.4
01_07_0045 - 40706873-40706956,40707083-40707253,40707585-407078... 29 3.4
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 29 3.4
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 5.9
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 28 7.8
11_01_0182 + 1437110-1438984 28 7.8
10_08_0650 - 19591898-19593148 28 7.8
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 28 7.8
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 28 7.8
03_05_0267 - 22538631-22539452 28 7.8
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 7.8
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 522 DPTITKVLPTSYMRGPPESPLHASSPGLPPAHS-CSLVITSASPP 391
D T+ L T PP+SP A+ P LP A CS + + +PP
Sbjct: 307 DMTVIDTLSTHSAAPPPDSPSTAAPPSLPSAACWCSPAVQTTAPP 351
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 477 PPESPLHASSPGLPPAHSCSLVITSASPP 391
PP P+ S P LPP S S V +S+SPP
Sbjct: 58 PP--PVAGSKPQLPPFSSSSSVASSSSPP 84
>05_03_0625 - 16325827-16326495
Length = 222
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 525 TDPTITKVLPTSYMRGPPESPL--HASSPGLPPAHSCSLVITSASPP 391
T P++ P ++ PP +P A SP PP H L I A PP
Sbjct: 7 TPPSLLLPSPPFFLPPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPP 53
>05_03_0487 +
14629678-14629789,14637563-14637687,14637898-14637987,
14638267-14638319,14638616-14638718,14639057-14639131,
14639479-14639583
Length = 220
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 429 HSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCCLTVLD 313
H C++ TS++ N C A ++S ST LTC + +D
Sbjct: 166 HFCTISATSSAV--NSFCIAANMSFSTTSELTCSMCFMD 202
>01_07_0045 -
40706873-40706956,40707083-40707253,40707585-40707812,
40708414-40708423,40709108-40709553
Length = 312
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 359 DRCQAAQRTLRGGEALVITKEQLCAGGKPGEDACRGDSGG 478
+RC+A +R GGE + E A K E A G GG
Sbjct: 16 ERCEARRRARSGGEVAMDEAEAAAAAAKMDELAGGGGGGG 55
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 604 YPWYVLVNVRIYAGDVP-------CAAIFRSVTDRSNHYESVTHFI 488
+PW ++R++ GD P CA FR V+D S H H +
Sbjct: 1152 WPWARTEHLRVHTGDRPYVCHEPGCAQTFRFVSDFSRHKRKTGHSV 1197
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 513 ITKVLPTSYMRGPPESPLHASSPGLPPAHS 424
+ ++ T +RG P +P+ SSP L P +S
Sbjct: 999 LARMKHTGMLRGGPSTPMLVSSPSLNPVYS 1028
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 327 LTVLDKPVPDMN-CLYIPQPATYISKS 250
+ VL PVP N CL+IP+ A Y SK+
Sbjct: 416 IPVLYSPVPFQNGCLHIPEVALYNSKA 442
>11_01_0182 + 1437110-1438984
Length = 624
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 462 LHASSPGLPPAHSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCCLTV 319
L +SP LP H L+++S PP L + L+ S+ G L L++
Sbjct: 77 LRLASPLLPVPHRLRLLLSSPLPPTTFLANSFLLASSSPGCLPSALSL 124
>10_08_0650 - 19591898-19593148
Length = 416
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 524 QIQPLRKCYPLHT*GVHRSRPCTRLHRVY 438
Q+ P R C+PL G HR R RVY
Sbjct: 289 QVVPRRSCFPLLAGGRHRRRRLRFTSRVY 317
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 479 PLMYEVGNTFVMVGSVSYGPKYCGT--RNIPGVYTNVY 586
P Y + N V V + YGP CG+ +P N+Y
Sbjct: 242 PFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNIY 279
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 189 IQILYGPSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTLNSHMLIETDV 368
I+++ P+ + +++ + C + +GE TS +YL + + L+SH +I D+
Sbjct: 205 IEVIDDPNADKFYMVLEYVEGKMVCDNGLGEATSRNYLRDIISGVM--YLHSHNIIHGDI 262
Query: 369 K 371
K
Sbjct: 263 K 263
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 498 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 391
P+S P SP S P P+ CS + SPP
Sbjct: 185 PSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSPP 220
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 59 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 166
TK C V TAPI KTI + Y D G+ D+ L+
Sbjct: 427 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,744,797
Number of Sequences: 37544
Number of extensions: 544881
Number of successful extensions: 1706
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -