Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B15
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   3.4  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.9  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 348 KLQVKLPRRWRLSFSWHLNMTAAVLRSHYMSTQRISSC*ITSF 476
           +L V L ++  L    H+ +    LR+H++ST R     I SF
Sbjct: 246 ELNVSLFKKNELDLRHHIKVLRDTLRNHWVSTTRDLKADIKSF 288


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 394 QEKLNLHLLGNFTCNLDPNVEFLM 323
           QE++ L +L NFTC  + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 173  VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQL 277
            V++ + ++D    Y+E  YV+ S S+    +++ L
Sbjct: 1356 VSVGQAKLDNFTVYFENVYVSASLSILRRFIETSL 1390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,290
Number of Sequences: 5004
Number of extensions: 43090
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)