Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B11
         (243 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.21 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   1.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   3.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 76   SGDYTCVVSTFMDEDSKTKQMTVFVP 153
            +G+Y+C V     +DS T Q+ V  P
Sbjct: 1371 AGEYSCHVENDYGQDSVTHQLIVNAP 1396



 Score = 23.0 bits (47), Expect = 0.47
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 46  LRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVP 153
           L I +   + SG Y CVV+  +  +S    +TV  P
Sbjct: 292 LIIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 327



 Score = 21.4 bits (43), Expect = 1.4
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +1

Query: 79  GDYTCVVSTFMDEDSKTKQMTVFVPETKFRLIQNKTD-----DDTVNVICAAEGVYPAP 240
           G+YTC+ S      + T  + + VP    R I   TD          V C A+G +P P
Sbjct: 674 GNYTCLASNSASVTTYTTSLFINVPP---RWILEPTDKAFAQGSDAAVECKADG-FPRP 728


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 KFRLIQNKTDDDTVNVICAAEGVYPAP 240
           K+ +   +T   T N++C+   ++P P
Sbjct: 55  KYLVEDEETSLATCNMLCSEPAIWPKP 81


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 219 RRTDDVHRVIIRLILYQP 166
           ++ +DVH+V   L++++P
Sbjct: 76  KQKEDVHKVFQHLMIHRP 93


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 3.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 126  FRIFVHKSGHYTSIITR 76
            F + +H+ G ++ IIT+
Sbjct: 1300 FAMMIHRFGTFSQIITK 1316


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 3.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 126  FRIFVHKSGHYTSIITR 76
            F + +H+ G ++ IIT+
Sbjct: 1300 FAMMIHRFGTFSQIITK 1316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,362
Number of Sequences: 336
Number of extensions: 861
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3642386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)