Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B11
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 28 1.2
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 27 2.8
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 27 2.8
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 27 2.8
04_01_0183 + 2079879-2080084,2080994-2081122,2081204-2081426,208... 26 3.7
05_04_0134 + 18318618-18318797,18318930-18319084,18319138-183192... 26 4.9
11_06_0262 + 21771577-21772059,21772167-21773252 25 6.4
08_02_1607 - 28201729-28201818,28201913-28201972,28202040-282020... 25 6.4
05_03_0285 + 11610471-11611262 25 6.4
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586... 25 8.5
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 1 LTYRASSDPLKMHRALRIIKTNTDISGDYTCV 96
LT S +PL M RALR KTN D+ ++ V
Sbjct: 469 LTSGLSWEPLVMWRALREKKTNGDVEDEHFAV 500
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 96 SVHFYGRRFENETNDSVRAGDEVPADT 176
S+H + +R+EN ND + A D DT
Sbjct: 396 SLHGFAKRYENFYNDRIEAEDAEEHDT 422
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 96 SVHFYGRRFENETNDSVRAGDEVPADT 176
S+H + +R+EN ND + A D DT
Sbjct: 396 SLHGFAKRYENFYNDRIEAEDAEEHDT 422
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 96 SVHFYGRRFENETNDSVRAGDEVPADT 176
S+H + +R+EN ND + A D DT
Sbjct: 441 SLHGFAKRYENFYNDRIEAEDAEEHDT 467
>04_01_0183 +
2079879-2080084,2080994-2081122,2081204-2081426,
2081569-2081824,2082358-2082550,2082602-2082815,
2082912-2083025,2083284-2084000
Length = 683
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 96 SVHFYGRRFENETNDSVRAGDEVPADT 176
S+H + +R+EN ND + A D DT
Sbjct: 379 SLHGFAKRYENFYNDRIEAEDGEEHDT 405
>05_04_0134 +
18318618-18318797,18318930-18319084,18319138-18319254,
18319286-18319412,18319740-18320216
Length = 351
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 156 LRHEHCHLFRFRIFVHKSGHY 94
LRH HCH F + +H S +
Sbjct: 119 LRHHHCHGFTESVGIHGSSRW 139
>11_06_0262 + 21771577-21772059,21772167-21773252
Length = 522
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 142 VFVPETKFRLIQNKTDDDTVNVI 210
VF+PET L+Q D DTV +
Sbjct: 229 VFLPETPNSLVQQGKDRDTVKAL 251
>08_02_1607 -
28201729-28201818,28201913-28201972,28202040-28202096,
28203526-28203670,28204318-28204331
Length = 121
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 170 SRNFVSGTNTVICFVFESSSIKVDTTQV*SPEISVFVLI 54
SR F+SGT VFE+ + + T V + ISVF LI
Sbjct: 79 SRGFLSGTVDKFKMVFETKASRRMATMV-ASFISVFFLI 116
>05_03_0285 + 11610471-11611262
Length = 263
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 147 EHCHLFRFRIFVHKSGHYTSIITRDISV 64
+HC + IF +SGH T + RD ++
Sbjct: 78 KHCTIIVGTIFGRRSGHVTFCVQRDAAM 105
>11_06_0297 +
22056644-22058212,22058316-22058423,22058513-22058678,
22059000-22059056,22059382-22059479,22059556-22059765,
22060469-22060582,22060819-22060948,22061165-22061298,
22062279-22062359,22062798-22062872,22063210-22063221
Length = 917
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 233 GYTPSAAQMTFTVSSSVLFCISRNF 159
G PSAA + TV +S + C NF
Sbjct: 603 GDAPSAADTSKTVLTSQILCFQENF 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,732,550
Number of Sequences: 37544
Number of extensions: 94314
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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