Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B10
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)         104   4e-23
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.34 
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)                  32   0.34 
SB_49129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score =  104 bits (250), Expect = 4e-23
 Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
 Frame = +2

Query: 32  MAPIKVGDMLPSL--DLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 205
           M P + G  +P +   + E +   KV+T  + AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 206 NADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPPL 385
            A   K++GV +I+C+SVND +VM +W A    +  +  + D NG F + + +  +   L
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSDL 119

Query: 386 G-GFRSKRFSMVIND 427
           G G RS R+SM++ D
Sbjct: 120 GFGKRSWRYSMLVKD 134


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +2

Query: 218 MKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPP-LGGF 394
           +KS+GV  + C++VNDP+VM+AWG             + NG   KA+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWG-------------EANGCQGKAVDLELDATPFLGNI 99

Query: 395 RSKRFSMVIND 427
           RSKR++M++ D
Sbjct: 100 RSKRYAMLVED 110



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 14/23 (60%), Positives = 21/23 (91%)
 Frame = +3

Query: 429 GKVEELNVEPDGTGLSCSLADKL 497
           G V++L+VEPDGTGL+CSL++ +
Sbjct: 111 GVVKQLHVEPDGTGLTCSLSNSI 133


>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 319 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 140
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 165 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 222

Query: 139 DNFLPGGYLASI 104
             FLPG   A I
Sbjct: 223 VTFLPGDLQAGI 234


>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
          Length = 565

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 319 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 140
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 312 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 369

Query: 139 DNFLPGGYLASI 104
             FLPG   A I
Sbjct: 370 VTFLPGDLQAGI 381


>SB_49129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 267 RMLWPLGVPSTTPRERYECLLI-QMAHSSKLLTSE 368
           R L P+GV  +    R++CL I +  H SK LTS+
Sbjct: 33  RPLPPIGVEESQGTRRHKCLFIAENRHQSKALTSQ 67


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 5/29 (17%)
 Frame = -1

Query: 502 TLSLSASEHDN-----PVPSGSTFNSSTL 431
           T++L+A  H +     P+PSGS++NSSTL
Sbjct: 713 TVALTAPGHSSIYTSTPLPSGSSYNSSTL 741


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 426  SLITIEKRFERNPPNGGRFVPRSRALMNAPFGSASIRTFPLVLCWAPQAAITYGSFTDTH 247
            +L+T  KR + +PPN  +  P + AL++  F + + R+      WA      YG F  +H
Sbjct: 2120 ALLTGIKRAKGSPPNQKQ--PITTALLHRIFATLNHRSSLDASFWAICLVAFYGMFRKSH 2177

Query: 246  TISETPSLF 220
             +  + + F
Sbjct: 2178 LLPTSATRF 2186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,177,401
Number of Sequences: 59808
Number of extensions: 389817
Number of successful extensions: 1769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)