Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B10
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    30   0.92 
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    30   0.92 
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    27   8.6  

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 83  DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 256
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 257 VNDPYVMAAWGAQHNTKGKV-RMLADPNG 340
            N    M A     +TKG V R+ + PNG
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNG 221


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +2

Query: 83  DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 256
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 257 VNDPYVMAAWGAQHNTKGKV-RMLADPNG 340
            N    M A     +TKG V R+ + PNG
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNG 221


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 86  SPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIV 247
           +PA++     I     +V   +P AF   C KT L  Y QNA+K + +GV  ++
Sbjct: 111 TPAHEDPNKTILKQDVIVTITLP-AFADYCEKTFLSIYSQNANKGR-QGVEWVI 162


>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 483 ASMTIQCRQVLRSIPLLCLSLITIEKRFERNPPNGGRFVPRSRALMNAPFGSASIRT-FP 307
           A MTI    VL S  ++ +       R +    NGG    RS+ L    F + +I+T  P
Sbjct: 207 AGMTIMSLTVLASFLVIVICGYKCYLRIKLLLKNGGTSSARSQVLQTQLFNALAIQTLIP 266

Query: 306 LVLCWAP 286
           ++L   P
Sbjct: 267 ILLLHTP 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,423
Number of Sequences: 27780
Number of extensions: 285235
Number of successful extensions: 807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)