Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B07
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    29   0.21 
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   0.64 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   2.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   4.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    24   7.9  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 49  RIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPSVN 228
           R+ + + + +   L+   TR++  PL  +  +  T  D+P   N   V+++    +  +N
Sbjct: 573 RLRESRKLELNGYLTKPTTRLARYPLLLSGVLKYTDKDNPDTENIPRVIEMIREFLTKLN 632

Query: 229 YK-GCC*NYLSI 261
           Y+ G   N LS+
Sbjct: 633 YETGKTENRLSL 644


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 151 TSNDSPPFNNADPVMQLYNSVIPSVNYKGCC 243
           TSND+  F+N+  V   +  V P + Y+  C
Sbjct: 45  TSNDASTFSNSPLVPDNFGVVYPGIIYRSAC 75


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 91  SALVTRVSLTPLCNNTAVSITSNDSPPFNNA 183
           S   T  S TPL +  + + TS  S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574



 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 76  ITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 186
           +T V S   T  S TP  N+T  S  S  +  F N +
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTN 591


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 61  DKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSP 168
           D  I+  VVLSA V   SL P   NT V+   ++SP
Sbjct: 97  DGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESP 132


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  LITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVM 195
           LI   L    ++VSL+P+ +  + S+T++       + P+M
Sbjct: 288 LIAQNLHTSASQVSLSPMASTASSSVTNSPVDTHTPSTPIM 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,924
Number of Sequences: 5004
Number of extensions: 17827
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)