Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B07
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1153 - 31294014-31294095,31294180-31294261,31294422-312948...    29   1.4  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   1.8  
07_03_0897 - 22389116-22389600,22389611-22389728                       27   5.5  

>04_04_1153 -
           31294014-31294095,31294180-31294261,31294422-31294857,
           31295124-31295312,31296190-31296360
          Length = 319

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 163 SPPFNNADPVMQLYNSVIPSVNYK 234
           SP    A PV Q++NS++PS   K
Sbjct: 268 SPELRGASPVTQIHNSLVPSCEQK 291


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 55  DDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDS 165
           +  + + + VV   LV ++S   +C N A SIT N +
Sbjct: 838 ESSETLTVNVVAQVLVAQLSQEQICINQAASITGNQT 874


>07_03_0897 - 22389116-22389600,22389611-22389728
          Length = 200

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 79  TVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNS 210
           +V  S L  R +   L + TAVS+ S+ S PF +  P    ++S
Sbjct: 52  SVDFSPLHRRGAAVVLSSRTAVSLLSSSSSPFAHQQPCRPYWSS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,290,663
Number of Sequences: 37544
Number of extensions: 117157
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)