Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B07
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07) 31 0.26
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1) 29 1.1
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04) 29 1.4
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 28 2.4
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 27 3.2
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 27 4.3
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 27 5.7
SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11) 27 5.7
SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_3502| Best HMM Match : zf-DBF (HMM E-Value=4.9) 26 9.9
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 26 9.9
SB_8007| Best HMM Match : HisKA_3 (HMM E-Value=4.2) 26 9.9
>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
Length = 227
Score = 31.1 bits (67), Expect = 0.26
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 ISA*VTEIPSRRRIDDDKMILITVVLSALVT--RVSLTPLCNNTAVSITSNDSPPFNNAD 186
+S+ +I S DK + I + L + T + SL P + +V +T N
Sbjct: 71 VSSYTKKITSYGWDQSDKFVKIYITLPEVETVPKESLVPNFGDRSVEVTVKGLKGVNYQL 130
Query: 187 PVMQLYNSVIPSVNY 231
+ +LY+S++PS +Y
Sbjct: 131 QICRLYSSIVPSTSY 145
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 31.1 bits (67), Expect = 0.26
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 103 TRVSLTPLCNNTAVSITSNDSPPFNNAD 186
T+ S TP+C + A T+N SP N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597
>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1485
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 84 DRNQNHFVVIDSSSRWYLCHSRTDIKFK 1
DR+ FV ++W +CH RTD+ K
Sbjct: 851 DRSVEAFVYTVLGAQWRVCHPRTDVHLK 878
>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
Length = 317
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 168
DDD L ++ A L S TPLC + + +I DSP
Sbjct: 61 DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99
>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 447
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 168
DDD L ++ A ++ + S TPLC + + +I DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 34 IPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITS 156
+P RR +M+++ + +++R++L+P C+N S+ S
Sbjct: 375 LPPLRRDYTHQMVVVAPLKVKMISRLTLSPTCSNKPHSLPS 415
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.5 bits (58), Expect = 3.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -3
Query: 84 DRNQNHFVVIDSSSRWYLCHSRTDIK 7
DR HF V+ W++ H R ++
Sbjct: 163 DRRYRHFTVVGXXXXWWVSHERESLR 188
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 154 SNDSPPFNNADPVMQLYNSVIPSVN 228
S D PPF++ D + S IPS+N
Sbjct: 421 SGDGPPFSSDDTSQEANGSSIPSIN 445
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 49 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 186
+ID+ ++IL+T A S +C ++A + T+N +P N +
Sbjct: 815 KIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGN 860
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSP 168
DDD L ++ A + ++ TPLC + + +I DSP
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSP 328
>SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 130 NNTAVSITSNDSPPFNNADPVMQ 198
N+ AV T +PP NN DP+ +
Sbjct: 388 NDLAVLYTQKKNPPMNNRDPLSE 410
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 26.6 bits (56), Expect = 5.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 63 VVIDSSSRWYLCHSRTDIKFK 1
+V+ ++++W +CH R D+ K
Sbjct: 541 IVLPANAQWRVCHPRADVHLK 561
>SB_14565| Best HMM Match : YGGT (HMM E-Value=0.11)
Length = 357
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 186 VSIIKWRRVIGGNRDCSVVT*RCERNAG 103
+S++KW G DC+VV R E N G
Sbjct: 1 MSLMKWMLDYGDKSDCNVVVVRKEDNDG 28
>SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 49 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVS 147
RI+DD + I L+A T + LCNN S
Sbjct: 179 RIEDDGAVAIAEALAAYNTNLIKLVLCNNNIAS 211
>SB_3502| Best HMM Match : zf-DBF (HMM E-Value=4.9)
Length = 476
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 106 RVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPSVNYKGC 240
R SL +CN T S DS P ++ +L + +P KGC
Sbjct: 4 RKSLGNVCNYTDRSPEDYDSSPLPSSAVSTELNDPFVPRKMSKGC 48
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 186 VSIIKWRRVIGGNRDCSVVT*RCERNAG 103
+S++KW G DC VV R E N G
Sbjct: 2368 MSLMKWMLDYGDKSDCHVVVVRKEDNDG 2395
>SB_8007| Best HMM Match : HisKA_3 (HMM E-Value=4.2)
Length = 178
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 115 LTPLCN-NTAVSITSNDSPPFNNADPVMQL 201
L PL ++ V ++SN PP N DP+ +L
Sbjct: 102 LLPLSQTDSRVPLSSNTVPPAENTDPITRL 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,742
Number of Sequences: 59808
Number of extensions: 142939
Number of successful extensions: 424
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -