Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B07
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    27   2.9  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     27   5.0  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     27   5.0  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    27   5.0  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H...    26   8.7  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 100 VTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPSV 225
           V+R   +P+  +T + ++S   PP +   P +Q+Y+S  PSV
Sbjct: 36  VSRTRRSPIAASTLI-LSSVPPPPTSTPPPEIQMYHSENPSV 76


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 37  PSRRRIDDDKMILITVVLSALVTRVSLTPLC-NNTAVSITSNDSPPFNNADPVMQLYNSV 213
           P +      KM    ++   L T  ++  +  +NT V I SND+  +   D V +LYN  
Sbjct: 52  PRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQ 111

Query: 214 IPSVN 228
              VN
Sbjct: 112 ALKVN 116


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +1

Query: 118 TPLCNNTAVSITSN--DSPPFNNAD-PVMQLYNSVIPSVNYKGCC 243
           TP    T +  T     SP    A  P+    N  +P+VN+KG C
Sbjct: 250 TPKFTTTTIQTTKKITTSPTSTTASIPITCTSNCPVPAVNFKGLC 294


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 118 TPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPS 222
           T   +++ +  TS++ PP  +A P + +Y+ ++PS
Sbjct: 58  TATSSSSVLPSTSSEPPPPASAPPRISIYHKMVPS 92


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 118 TPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPS 222
           T   +++ +  TS++ PP  +A P + +Y+ ++PS
Sbjct: 62  TATSSSSVLPSTSSEPPPPASAPPRISIYHKMVPS 96


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 118 TPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPS 222
           T   +++ +  TS++ PP  +A P + +Y+ ++PS
Sbjct: 58  TATSSSSVLPSTSSEPPPPASAPPRISIYHKMVPS 92


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 118 TPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPS 222
           T   +++ +  TS++ PP  +A P + +Y+ ++PS
Sbjct: 62  TATSSSSVLPSTSSEPPPPASAPPRISIYHKMVPS 96


>Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical
           protein F57C7.2a protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 112 SLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPSVNYKGC 240
           +L P C      +TS+    + +A+P   +  S IP ++  GC
Sbjct: 583 TLPPFCLPLTSLLTSSRQRAYVSAEPFNTIVQSGIPLIDGSGC 625


>AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H
           exchanger isoform 5a protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 112 SLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIPSVNYKGC 240
           +L P C      +TS+    + +A+P   +  S IP ++  GC
Sbjct: 583 TLPPFCLPLTSLLTSSRQRAYVSAEPFNTIVQSGIPLIDGSGC 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,293,170
Number of Sequences: 27780
Number of extensions: 103153
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)