Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B07
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    28   2.0  
At5g11290.1 68418.m01318 expressed protein contains Pfam profile...    27   4.6  
At3g06670.1 68416.m00786 expressed protein                             26   8.1  

>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 206 LYNCITGSALLNGGESLEVIETAVLLHRGV 117
           +Y  +T   ++NG E L ++ET V+ H  +
Sbjct: 142 IYEPMTNKGVMNGIEKLPLLETLVIFHSSI 171


>At5g11290.1 68418.m01318 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 353

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 172 FNNADPVMQLYNSVIPSVNYKG 237
           F NA+ V +L+NS++   +Y G
Sbjct: 272 FGNAEDVSRLFNSILKETSYSG 293


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 221 DGMTLLYNCITGSALLNGGESLEVI 147
           DG+ +++N + G  LLN  + LE I
Sbjct: 188 DGLHMIFNIVKGIILLNSSQILEKI 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,887,740
Number of Sequences: 28952
Number of extensions: 94540
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)