Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B05
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.4  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 310 ICCDCVTVPNSKIVISQQRNR 248
           I CDCV    SK+V + Q+ R
Sbjct: 255 IMCDCVRSEASKVVKNAQKLR 275


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -3

Query: 304 CDCVTVPNSKIVISQQRNRVLRIEC 230
           C+CV +   + ++++ + R ++ EC
Sbjct: 65  CECVPLQKKRRIVARVQCRSIKNEC 89


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 215 GDDHLPVH*FRRISRLRC*ELR*PCIPNGPVDLRPFY 105
           G+  L ++ +  ++ ++C     PC  +G V L  F+
Sbjct: 597 GNGALMINQWENVTNIQCPNADLPCPKDGHVILETFH 633


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 215 GDDHLPVH*FRRISRLRC*ELR*PCIPNGPVDLRPFY 105
           G+  L ++ +  ++ ++C     PC  +G V L  F+
Sbjct: 597 GNGALMINQWENVTNIQCPNADLPCPKDGHVILETFH 633


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,257
Number of Sequences: 336
Number of extensions: 2440
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)