Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B05
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 43 2e-05
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 37 0.002
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 30 0.23
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 27 1.2
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 27 2.1
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 26 2.8
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 26 2.8
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 25 8.6
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 8.6
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.6
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 8.6
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 43.2 bits (97), Expect = 2e-05
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 98 TLYKMDASPPVRSVYMVIAALNIEGVKYVETNVLGDDHLQEDYLTFNPQHTIPLLTD--- 268
TLY P V + + LN+ + G+ +E +L NP +P L D
Sbjct: 5 TLYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKE-HLALNPNGRVPTLVDHKN 63
Query: 269 DDFAIWDSHAIATYLINKYGKD 334
+D+ IW+S AI YL +KY D
Sbjct: 64 NDYTIWESDAILIYLADKYDTD 85
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 98 TLYKMDASPPVRSVYMVIAALNIE-GVKYVETNVLGDDHLQEDYLTFNPQHTIPLLTD-- 268
TL+ P V + L++ +YV N ++ ++L NP +P L D
Sbjct: 5 TLWSHAHGPNPWKVVQALKELDLTYETRYV--NFSKNEQKSPEHLALNPNGRVPTLIDHH 62
Query: 269 -DDFAIWDSHAIATYLINKY 325
+D+ IW+S AI YL +KY
Sbjct: 63 NNDYTIWESDAILIYLADKY 82
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 29.9 bits (64), Expect = 0.23
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +2
Query: 224 YLTFNPQHTIPLLTDDDFAIWDSHAIATYLINKYGKDGPLYPNEPKKRALIDXKLHFDSG 403
Y +P P++ DD +S AI +L+ KYG + + + +HF
Sbjct: 42 YTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEA 101
Query: 404 ILYP 415
L P
Sbjct: 102 SLMP 105
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 146 VIAALNIEGVKYVETNVLGDDHLQEDYLTFNPQHTIPLL 262
+++ N+ K V NVL +D L+E F+ TIP L
Sbjct: 60 ILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQL 98
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 356 PKKRALIDXKLHFDSGILYPA 418
PK RAL+D H+D+ YPA
Sbjct: 468 PKLRALVDALRHYDTKSGYPA 488
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 449 SRIWDHHFL*TLDIKFH 399
SR+WDHH + L ++FH
Sbjct: 142 SRVWDHHGVEHLVLQFH 158
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 2.8
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 LMTILLFGTVTQS-QHI*LTNMEKTVHFIQTNQRRELSSXTSYTSTVE 404
L ++ L TV QS Q+ +T +EK+ HFI + ++S T +T+E
Sbjct: 796 LWSLGLVDTVEQSIQNAYVTCIEKSEHFIYIENQFFVTSTTCEGTTIE 843
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 107 KMDASPPVRSVYMVIAALNIEGVKYVETNVLGDDHLQEDYL 229
+ +SP S Y + +L+++ K E+N LG + L ++ L
Sbjct: 163 EQSSSPLEYSEYEEVESLDVKSEKDTESNNLGQNELLKEQL 203
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 191 NVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIATYLINKYGKDGPLYPNEPKKR 367
N + +D ++ED F P I ++T+ + A IA + K ++ PL P K+R
Sbjct: 215 NGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAI--KAVQELPLNPKWSKRR 271
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 275 NRHQSAAESCAED*MSDSLLGDDHLPVH 192
N+H S + S A +S L H+PVH
Sbjct: 473 NKHPSLSNSAASPPVSSPGLRRSHIPVH 500
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 INKYGKDGPLYPNEPKKRALIDX-KLHFDSGILYPAFRENDDPIFYWGETSL 466
I ++ K+ Y E K++ I K+ ++ + R +PI Y+GE +L
Sbjct: 21 ITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYGEPITYFGEDAL 72
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 284 WDSHAIATYLINKYGKDGPLYPNEP 358
WD H + Y KYG + Y +EP
Sbjct: 230 WDPHGLCIYSCFKYGSNA--YSHEP 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,911
Number of Sequences: 5004
Number of extensions: 41150
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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