Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B05
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310...    58   5e-09
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575...    54   7e-08
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576...    48   3e-06
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     46   1e-05
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110     46   1e-05
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530...    46   2e-05
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931     44   7e-05
05_04_0304 - 20048518-20049003,20049074-20049412                       36   0.014
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    34   0.075
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    32   0.23 
06_01_0225 - 1727461-1728825                                           29   1.6  
07_01_0561 + 4171812-4172144,4173468-4174253                           29   2.1  
09_06_0232 - 21737299-21739233                                         29   2.8  
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    28   5.0  
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33...    28   5.0  
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436     27   6.5  

>02_04_0267 -
           21430370-21430474,21430559-21430618,21430937-21431046,
           21431220-21431295,21431541-21431594,21431935-21432006,
           21432088-21432173,21432694-21432750,21432886-21432991
          Length = 241

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
 Frame = +2

Query: 140 YMVIAALNIEGVKYV--ETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIATYL 313
           + V  ALN++G++Y     N+L  +H   +++  NP   +P L D D  I DS+AIA YL
Sbjct: 26  HRVRIALNLKGLEYEYKAVNLLKGEHSDPEFMKVNPMKFVPALVDGDAVIGDSYAIALYL 85

Query: 314 INKYGKDGPLYPNEPKKRAL 373
            +KY  + PL P + K +AL
Sbjct: 86  EDKY-PEHPLLPQDLKMKAL 104


>12_01_0674 +
           5755523-5755613,5756325-5756366,5756830-5756915,
           5757008-5757079,5757450-5757525,5757765-5757826,
           5758119-5758178,5758293-5758394
          Length = 196

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 34/78 (43%), Positives = 42/78 (53%)
 Frame = +2

Query: 140 YMVIAALNIEGVKYVETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIATYLIN 319
           Y V  ALN++G+ Y    V   D    DY   NP   +P L D DF I DS AI  YL +
Sbjct: 21  YRVRIALNLKGIDYEYRAVTRGD---PDYGKINPIKYVPALVDGDFTISDSLAIILYLED 77

Query: 320 KYGKDGPLYPNEPKKRAL 373
           KY +  PL P + KK+AL
Sbjct: 78  KYPQH-PLLPQDLKKKAL 94


>12_01_0675 +
           5759641-5759722,5760247-5760291,5760690-5760775,
           5760888-5760959,5761210-5761263,5761385-5761460,
           5761778-5761839,5762174-5762233,5762331-5762432
          Length = 212

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 30/72 (41%), Positives = 39/72 (54%)
 Frame = +2

Query: 158 LNIEGVKYVETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIATYLINKYGKDG 337
           LN++GV Y   +V  +     DY   NP   IP L D D  + DS AIA YL +KY +  
Sbjct: 24  LNLKGVDYEYKSV--NPRTDPDYEKINPIKYIPALVDGDLVVSDSLAIALYLEDKYPQHA 81

Query: 338 PLYPNEPKKRAL 373
            L P + KK+AL
Sbjct: 82  -LLPKDLKKKAL 92


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 134 SVYMVIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIAT 307
           +V  V   LN +G+ +  V  ++    H Q  +L  NP   IP+L D D  +++S AI  
Sbjct: 18  NVVRVATVLNEKGLDFDLVPVDLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINR 77

Query: 308 YLINKYGKDG-PLYPNEPKKRALIDXKLHFDSGILYPA 418
           Y+  KY  +G  L P E    A ++  L  +S   YPA
Sbjct: 78  YIATKYKAEGADLLPAEASP-AKLEVWLEVESHHFYPA 114


>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
          Length = 215

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +2

Query: 134 SVYMVIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIAT 307
           +V   +A L   G +Y  V  +    +H   D+L  NP   +P L D D  +W+S AI  
Sbjct: 14  NVTRCVAVLEEAGAEYEIVPLDFSKGEHKAPDHLARNPFGQVPALQDGDLFLWESRAICK 73

Query: 308 YLINKYGKDGPLYPNEPKKRALIDXKLHFDSGILYPA 418
           Y+  K  K   L   + K+ A++D  L  +S    PA
Sbjct: 74  YVCRK-NKPELLKDGDLKESAMVDVWLEVESNQYTPA 109


>01_04_0021 -
           15151645-15151809,15152184-15152343,15152548-15153025,
           15153243-15153291,15153585-15153734
          Length = 333

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 146 VIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIATYLIN 319
           V+ AL   G +Y  V  +  G DH + ++L  NP   IP+L D D  ++ S AIA Y+  
Sbjct: 18  VLVALEEAGAEYEVVPMSRSGGDHRRPEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFR 77

Query: 320 KY 325
           KY
Sbjct: 78  KY 79


>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
          Length = 218

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
 Frame = +2

Query: 134 SVYMVIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIAT 307
           +V  V+  L   G  Y  V  + L  +    +++  NP   IP L D D  +++S AIA 
Sbjct: 14  NVSRVLVCLEEVGADYELVTVDFLAGEQNSPEHVERNPFGKIPALQDGDLVLFESRAIAK 73

Query: 308 YLINKY--GKDGPLYPNEPKKRALIDXKLHFDSGILYPA 418
           Y++ KY   K   L  ++ ++ AL+D     ++   YPA
Sbjct: 74  YILRKYKSSKVDLLRESDIREAALVDVWTEVEAHQYYPA 112


>05_04_0304 - 20048518-20049003,20049074-20049412
          Length = 274

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = +2

Query: 140 YMVIAALNIEGVKYVETNV-LGDDHLQEDYLTFNPQHT-IPLLTDDDFAIWDSHAIATYL 313
           + V  AL ++ +++V     LG+    E  L  NP H  +P+L      + +S  I  YL
Sbjct: 25  HRVQLALRLKALEFVYAEEDLGNK--SEALLRLNPVHKKVPVLVHRGRPLAESVIILQYL 82

Query: 314 INKYGKDGPLYPNEPKKRALIDXKLHFDSGILYPA 418
            + + +  PL P++P  RAL     HF    L PA
Sbjct: 83  DDAWPESRPLLPSDPFDRALARFWCHFADDKLGPA 117


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 131 RSVYMVIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIA 304
           ++ +  + A    GVK   V+   +G  +   ++L  NP   IP+L   D  +++S+AIA
Sbjct: 12  KNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIA 71

Query: 305 TYLIN 319
            Y+++
Sbjct: 72  RYVLS 76



 Score = 33.9 bits (74), Expect = 0.075
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 131 RSVYMVIAALNIEGVKY--VETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIA 304
           ++ +  + A    GVK    +   +G  +   +YL  NP   +P+L   D  +++S+AIA
Sbjct: 573 KNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIA 632

Query: 305 TYLIN 319
            Y+++
Sbjct: 633 RYVLS 637


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 131 RSVYMVIAALNIEGVKYVETN--VLGDDHLQEDYLTFNPQHTIPLLTDDDFAIWDSHAIA 304
           ++ +  + A    GVK   T    +G  +   ++L  NP   IP+L   + A+++S+AIA
Sbjct: 36  KNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIA 95

Query: 305 TYL 313
            Y+
Sbjct: 96  RYV 98


>06_01_0225 - 1727461-1728825
          Length = 454

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 385 LVIDESSLLWFVWIKWTVFSIFVN*ICCDCVTVP 284
           +VIDES      W+ W    + V+ ICC  V  P
Sbjct: 310 VVIDESGPYARAWVTWKQVLLLVDVICCCAVLFP 343


>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 263 TDDDFAIWDSHAIATYLINKYGK 331
           T + F +WD HA AT L+ ++ K
Sbjct: 75  TSNSFVVWDPHAFATVLLPRFFK 97


>09_06_0232 - 21737299-21739233
          Length = 644

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 275 NRHQSAAESCAED*MSDSLLGDDHLPVH 192
           N H+S AE    +   D  +GDD LP H
Sbjct: 591 NIHESGAEGIGHESSDDMYVGDDRLPHH 618


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 107 KMDASPPVRSV--YMVIAALNIEGVKYVETNVLGDDHLQEDYLTFNP 241
           +M  S P  S   Y +I    +EG KY E   + +D L E   +F P
Sbjct: 202 RMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKP 248


>05_01_0048 +
           331155-333077,333208-333354,333540-334087,334481-334616
          Length = 917

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 311 LINKYGKDGPLYPNEPKKRALIDXKLHFDSGILYPAFRENDDPIFYWGETS 463
           +I    K   L P   + R ++D   H D G+ + A    +  +F WGE S
Sbjct: 56  IIRSTEKTDFLLPKPLESRLVLDV-YHVDCGVRHAALVTRNGDVFTWGEDS 105


>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
          Length = 79

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = +2

Query: 101 LYKMDASPPVRSVYMVIAALNIEGVKYVETNVLGDDHLQEDYLTFNPQHTIPLLTDDDFA 280
           +Y    S P R++ ++   +N    + V  ++   +HL  ++   NP   +P + D  F 
Sbjct: 7   VYADRRSQPSRAI-IIFCRVNRIDFEEVTVDLFKREHLSPEFKKINPMGQVPAIVDGRFR 65

Query: 281 IWD 289
           +++
Sbjct: 66  LFE 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,748
Number of Sequences: 37544
Number of extensions: 231318
Number of successful extensions: 512
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)