Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B05
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_11514| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_5601| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_115| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.9  

>SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 277 CYLGQSRNRNIFN*QIWKRRSTLSKRTKEESSHRXQVTLRQWNFIS 414
           C  GQ R    F   IW+RRS + K T  ++ +  +     WN  S
Sbjct: 61  CLCGQERR--FFCRYIWQRRSQIMKLTVSDAVYNYRFVNNLWNAAS 104


>SB_11514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 308 YLINKYGKDGPLYPNEPKKRALIDXK--LHFDSGILYPAFREND 433
           Y++ K    GPLYP E K+  L   K  +     ++ PA   ND
Sbjct: 15  YIVKKNNLHGPLYPFEIKELVLAKYKAEIQASQAVITPATSIND 58


>SB_5601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 317 NKYGKDGPLYPNEP-KKRALIDXKLHFDSGILYPAFRENDDPIFYWGETSLK 469
           NK   D  L+ N+    + L + K   D G+LY A   N  PI Y  ET ++
Sbjct: 73  NKRVADKGLFNNKGVADKGLFNNKHVADKGLLYQARIRNHGPICYQRETVIR 124


>SB_115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 242 QHTIPLLTDDDFAIWDSHAIATYLINKYGKDGPLYPNEPKKRALIDXK--LHFDSGILYP 415
           Q  + +L +   A+  ++    Y++ K    GPLYP E K+  L   K  +     ++ P
Sbjct: 150 QIVVNILQEAGIAMDINYNYKVYIVKKNNLHGPLYPFEIKELVLAKYKAEIQASQAVITP 209

Query: 416 A 418
           A
Sbjct: 210 A 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,145
Number of Sequences: 59808
Number of extensions: 286768
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)