Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B04
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 33 0.090
03_05_0294 + 22855503-22855946,22856346-22856399 32 0.28
09_02_0338 + 7426999-7428322,7428390-7428646 29 1.5
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 1.5
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 29 1.9
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 29 2.6
03_06_0584 + 34909800-34910261 28 4.5
01_06_0824 - 32243495-32244319,32244449-32244859 28 4.5
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 5.9
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 33.5 bits (73), Expect = 0.090
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +2
Query: 179 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGN-GDYSGV---ANPYISL-SKTFSEM 343
+NV SPL + + + L AGAG +R ++ LG G G+ A + L S
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 344 NPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDF 460
A+ ++V +L + F + V +Y++E ++DF
Sbjct: 95 GGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 31.9 bits (69), Expect = 0.28
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +2
Query: 182 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFL---GNGDYSGV---ANPYISL-SKTFSE 340
NV SPL + + + L AGAG +R ++ L G G G+ A + L S
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 341 MNPDYFTMANKIYVGNKYTLDEKF-TITVRQYQSEVETIDF 460
A+ +++ + +L + F + V +Y++E ++DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 257 HDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP 153
H+YLH+ + E + +SRLMV+ +C ++ + P
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTLPHRNP 413
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 255 RLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 85
R+P P P L+ ++S+I L+F Y + C + + + P+ L W +
Sbjct: 40 RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 290 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTF 156
NL+ +C H + RRQL T+ SS + +S PS Y+F
Sbjct: 799 NLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTSYSF 843
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 329 FYLS*CTDWQPRYNLHCLKTC 267
+ L CTD+ P+Y HC +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316
>03_06_0584 + 34909800-34910261
Length = 153
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 279 PKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYV 157
P + S +L A A Y+ + +ITP G++ F + DD Y+
Sbjct: 42 PSLKASSKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 27.9 bits (59), Expect = 4.5
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 176 DKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG--NGDYSGVANPYISLSKTFSEMNP 349
DKN+ SPL + + L AGA + +I FLG G +++L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 350 ------DYFTMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDFSD 466
AN ++V L + + +Y++E + F D
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRD 136
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 251 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYV-GNKYT 397
S A+ D GD V + + L+ F E++PD+ ++N +Y+ G+ Y+
Sbjct: 152 SYADTDAGFRTGDTIAVHHILVFLNNWFQEVHPDF--LSNPLYIAGDSYS 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,543
Number of Sequences: 37544
Number of extensions: 269513
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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