Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B04
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   2.0  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   3.4  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       28   3.4  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)            27   7.9  
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)                27   7.9  

>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 285 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 151
           PLP + + +   PS +PA Y S + +T  G  +TF   D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 287 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 433
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 287 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 433
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +2

Query: 287 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKF-TITVR 427
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + + T++++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIK 161


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 290 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 135
           N  C +TCR+P +Y    +LC     S     K  ++ P     F    AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/93 (21%), Positives = 39/93 (41%)
 Frame = -1

Query: 330 VLLKLMYGLATPL*SPLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 151
           V+ + M G+  P+ +P    ++    +P+  P L  +I  +T    +TT L    ++   
Sbjct: 131 VIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFLTNLPMETTELMLSMLFNQF 190

Query: 150 RNCKEVLSMASPKAVLLYSWSEE*NARTLQTAI 52
              KEV  +     +    +  E  A T + A+
Sbjct: 191 PGFKEVRLVPGRSDISFVEFENEVQAGTAKDAL 223


>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 116 GDAIDKTSLQFLKETYTSSKDKNVV 190
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
          Length = 665

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 116 GDAIDKTSLQFLKETYTSSKDKNVV 190
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,838
Number of Sequences: 59808
Number of extensions: 304871
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)