Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B02
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   0.77 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   5.5  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   5.5  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   7.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.5  

>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 274 LYVSIMQTGSGKNTLVMSFHIYAGNPNIINT 182
           + V + +TGSGK T +  F +Y   P++ NT
Sbjct: 93  IIVFVGETGSGKTTQIPQFVLYDELPHLTNT 123


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 271 YVSIMQTGSGKNTLVMSFHIYAGNPNIINTI--*IQFQESMEAIQYLYLI*NII 116
           Y+ +  T   +N ++  FH Y+ NP+   T+   I F    E  + +YL+ N I
Sbjct: 553 YLELQLTMFRQNNMLTEFHPYSSNPSDWFTLHHGIAFWAKSEENKQIYLLGNPI 606


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 251 WKWKE-HSSYEFSHLRGKSQYY*YNLNSI 168
           W+ K+ +SS +FS L+   QY  +++NS+
Sbjct: 509 WRCKDQYSSNQFSSLKNVCQYIEHHINSL 537


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +2

Query: 257 HNTNI*RCRQSAVRHRFRNKLVYIYLHFKGIKYVK*KNIMT 379
           HN       Q   +H+ R +L+Y+  H K + + K  ++++
Sbjct: 177 HNEKEMEALQRLSKHKIRKRLIYVSQHKKKMPWSKFNSVLS 217


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 59  YLLYFITTK*ITFSETIQFYYILN*IKILYSFHRLLEL 172
           Y+ YFI     TF+ T++   I+  + I+Y  H +L++
Sbjct: 284 YVRYFIAE--YTFASTLRHPNIIKVLDIIYKRHTILQI 319


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 257 ANWKWKEHSSYEFSH 213
           A W W  H+ Y FSH
Sbjct: 585 AAWPWLLHADYAFSH 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,842
Number of Sequences: 5004
Number of extensions: 42504
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)