Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B02
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                28   5.7  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          27   7.5  
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)              27   9.9  
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   9.9  

>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 390 CY*SVIIFFYFTYFIPLKCKYIYTSLFLNLCLTADCRHLYMLVLCKLEV 244
           CY  ++    + Y   L C+Y+  SL   + +   C H+ M + C +++
Sbjct: 106 CYVDIVDMLLYRYCDMLLCRYVVLSLGCYVVMLL-CHHVVMSLSCYIDM 153


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 402 PFETATQFVLTVLLSDIN-YSMNVTETGFHMSRINY 506
           P    T F+  V+ S  + YSMN+   G+HM   +Y
Sbjct: 393 PGSGKTSFIANVICSQFSSYSMNIRVLGYHMCISSY 428


>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
          Length = 129

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 260 YANWKWKEHSSYEFSH 213
           Y  W W ++SSY F H
Sbjct: 67  YRQWSWLDYSSYGFKH 82


>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 260 YANWKWKEHSSYEFSH 213
           Y  W W ++SSY F H
Sbjct: 124 YRQWSWLDYSSYGFKH 139


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 4/142 (2%)
 Frame = -2

Query: 542 TTREKNNVRLLTIINSRHMKASFCNIHRIIDIREQDC*NKLCRSFKWEYLIVINLSLYFF 363
           T  ++ N+    + NS+ ++    ++H + D  E     K   S     LIVIN +L F 
Sbjct: 469 TAEDRENLTEAVVSNSKLLE----HVHLLPDKNEIQAYQK--GSLIVLLLIVINFTLVFL 522

Query: 362 ISRTLFP*NVNIYTQVCF*ICV*LLTADIFIC*YYANWK----WKEHSSYEFSHLRGKSQ 195
           I R   P  +N+     F I +  L   IF+   Y N K    W +         + K  
Sbjct: 523 IVRFREPDYLNLGLSCVFAITIIFLGLIIFLFHCYKNPKARMFWAQCCQKNACWRKNKKY 582

Query: 194 YY*YNLNSIPGVDGSYTISLFN 129
                 N    VD S T  L N
Sbjct: 583 TVEQEGNEDEAVDKSDTAKLMN 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,247
Number of Sequences: 59808
Number of extensions: 277807
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)