Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B02
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46343-3|CAA86459.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z46343-3|CAA86459.1|  316|Caenorhabditis elegans Hypothetical
           protein T23F11.4 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 23  IISIQKGYFTLNYLLYFITTK*ITFSETIQ 112
           +I+I  G  TLN L+ F+T K ITFS T Q
Sbjct: 4   VINIDPGS-TLNELMAFMTQKTITFSVTDQ 32


>AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical
           protein R193.3 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 313 VSESVSNC*LPTSLYVSIMQTGSGKNTLVMSFHIYAGNPNII 188
           V   ++N     +++ S +  G+ KNT +M+ HI AGN ++I
Sbjct: 153 VGNELANSAFEKNIFCSQLLIGN-KNTTMMTDHIVAGNLSVI 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,315
Number of Sequences: 27780
Number of extensions: 230136
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)