Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B01
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.00 
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   4.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   5.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.3  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   7.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   9.3  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   9.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.3  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 163 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALSDHHVYLEG 342
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 343 TLLK 354
           TLLK
Sbjct: 385 TLLK 388


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +1

Query: 349 LKPNMVTAGQSCKKTYTPMDIARATV--TALLRTVPAAVPGVTFLSCGQSEEEASVNLN- 519
           ++  ++  GQ   +TY+  + AR     T+ +  + +++P +  +     EE+AS+N+N 
Sbjct: 54  IQQEILKNGQVRVETYSSSNTARKIFICTSSVSNLASSIPALIKVVTPTKEEDASLNINL 113

Query: 520 AINS 531
           A++S
Sbjct: 114 AVSS 117


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 170 LAFSKMAWYDGVLRPIFNTQ 111
           + F+K+ WY   L  +FNT+
Sbjct: 33  ITFAKLRWYGKTLLEVFNTE 52


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 509  TEASSSDWPQERKVTPGTAAGTVLSKAVTVARA 411
            + +S+S W    +V P TAA    S   ++A A
Sbjct: 949  SSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 102 QVALRIEDRPQHSIVPSHLGECQCVG 179
           Q+    +D    SIVP+H  E  C+G
Sbjct: 157 QILFLFKDHMNTSIVPAHDSEISCLG 182


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 173 CWLATPPSARVSVSCQ*LS 229
           C + TPP A+VSVS + +S
Sbjct: 528 CLVVTPPEAKVSVSFEEIS 546


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 121 KIGRNTPSYQAILENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAA 300
           KI +       ILE+++ +    S+C  +    IV PEV     + L R Q   + +L  
Sbjct: 111 KISKCLSLLSDILESSSKIHNQLSVCHDEYSTSIVSPEV---AMNYLQRRQSGMKDLLFV 167

Query: 301 VYKAL 315
            Y+ L
Sbjct: 168 FYERL 172


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 202 SGRWRRSEPTHWH 164
           SG W  S P HWH
Sbjct: 380 SGSWWISSPDHWH 392


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 296 LPYTRHSATTTSTLREPFSNLIWLPLVSRARRLTLQW 406
           +P+T H+         P   L  LP + R R L  QW
Sbjct: 182 VPFTPHAFVPPVNNASPLPALNTLPQLLRPRNLDAQW 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,936
Number of Sequences: 5004
Number of extensions: 45837
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)