Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A23
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   2.9  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   3.8  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   3.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   3.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.0  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   6.6  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    24   8.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 266  SSFSTNADTSFAISLFSLTPKFPIDSRVATAPGLVDSPPNDIG 138
            +S +  A  S   S+ +L P  P  S  A+AP +   PP  +G
Sbjct: 890  ASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVG 932


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 133 DSPISFGGESTSPG---AVATLESIGNLGVKENKEIANEVSAFVEKEL-GIKKDRFFLTF 300
           D P+    E ++P    A+A  +   +L VKENK+  +  S FV   +   KK +   T 
Sbjct: 34  DKPVK-QDEQSNPNVREAIANSDGQESLAVKENKDTESSSSHFVPNGVSNSKKRKLVATD 92

Query: 301 YDVLNYNVAKGGIT 342
            DV +++++   +T
Sbjct: 93  LDV-DFDISSVRVT 105


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   FKDSH*FNRKRKSR*ILSIKLYRF 78
           F D   + R+RKS   LSIKLY F
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAF 132


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 345 DGDAAFRDVVVQDIVESKE-KSVLFNTEFLFNE 250
           D +  F+D V + ++ESK+ K+++     LFNE
Sbjct: 529 DPNNTFKDDVAKTLIESKKRKAIIIEGAELFNE 561


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 157  ESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKD 282
            E T+P +V   ++     +KE   IA EV   VEK + I ++
Sbjct: 924  EETTPVSVRGAKADVENAIKEISAIAEEVKNLVEKVIKIDRE 965


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 299 KVRKNLSFL-IPSSFSTNADTSFAISLFSLTPKFPIDSRVATAPGLVD 159
           K RKN+ F      FST     F  +L S T  FP+ S +     L+D
Sbjct: 359 KERKNVLFFDCDRLFSTTNTEMFVSTLASQTGYFPLFSFLNNISSLID 406


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 175 AVATLESIGNLGVKENKEIANEVSAFVEKELGIKKD 282
           A A LESI    +KE K   + +SAF  +  GI  D
Sbjct: 84  ATAYLESITPSSLKELKPFHSTLSAFTNETGGIIDD 119


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 281 SFLIPSSFSTNADTSFAISLFSLTPKFPIDSRVATAP 171
           S +IPSS S+   +S A ++ S +   P+ S   T+P
Sbjct: 38  SSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSP 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,319
Number of Sequences: 5004
Number of extensions: 30077
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)