Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A23
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0047 + 410349-410459,411289-411489,412251-412454 48 2e-06
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 48 2e-06
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 44 5e-05
07_01_0609 + 4517467-4517529,4517627-4517701,4517914-4518030,451... 31 0.30
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 29 2.1
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 27 4.9
08_02_0482 - 17643603-17643955,17644024-17646604 27 6.4
>12_01_0047 + 410349-410459,411289-411489,412251-412454
Length = 171
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +1
Query: 139 PISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRFFLTFYD 306
P++FGG + P A L SIG L NK+++ +++ +E +L I K RF+L FYD
Sbjct: 48 PMAFGG-TQEPAAYGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYD 102
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +1
Query: 139 PISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRFFLTFYD 306
P++FGG + P A L SIG L NK+++ +++ +E +L I K RF+L FYD
Sbjct: 649 PMAFGG-TQEPAAYGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYD 703
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 139 PISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRFFLTFYDVLNY 318
P+SF S P A L SIG +G N +++ ++ +E +L + + RF++ F DV +
Sbjct: 48 PMSFAA-SEEPAAYGELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGF 106
Query: 319 NVAKGGIT 342
N+ G T
Sbjct: 107 NLGFNGST 114
>07_01_0609 +
4517467-4517529,4517627-4517701,4517914-4518030,
4518533-4518647,4519328-4519433,4519684-4519801,
4519905-4519972,4520697-4520830,4520932-4520975,
4521100-4521176,4521415-4521562,4522155-4522216,
4522373-4522472
Length = 408
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 160 STSPGAVATLESIGNLGVK-ENKEIANEVSAFVE 258
ST+PGA+ L+SI NL +K E I N+ A ++
Sbjct: 262 STTPGAITWLDSISNLPLKAERSFICNDTGALIQ 295
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 272 IPSSFSTNADTS--FAISLFSLTPKFPIDSRVATAPGLVDSPPNDIGLSGCYDTNK 111
+ SSF + D+S F++ S + K S++ + +VDSP NDI G Y+ ++
Sbjct: 1396 VSSSFLLDDDSSIPFSVDDISKSMKEIEGSQLTSGKVVVDSPTNDIWQIGRYEVHR 1451
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 164 VDSPPNDIGLSGCYDTNKFFRHLLDCLR 81
VDSP +GL+ CYD F L CLR
Sbjct: 223 VDSPFGRLGLTVCYDLR--FPELYQCLR 248
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 269 PSSFSTNADTSFAISLFSLTPKFPIDSRVATAPGLVDSPPNDI--GLSGCYDTNKFFRHL 96
PSS S+ A + +S SL +FP + L+D ND+ L GC RHL
Sbjct: 65 PSSSSSAAIAAVLLSNLSLAGEFPAPLCELRSLALLDLSYNDLTGPLPGCLAAMPSLRHL 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,786
Number of Sequences: 37544
Number of extensions: 169834
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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