Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A21
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   1.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   1.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   4.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     23   4.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    23   5.4  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    23   5.4  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    22   9.4  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
            heterochromatin assembly Hrr1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1015

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 35   TEVIYLLFCCRLCVYLFRNRLQVFIIA-MELTAEGKTPEYMALASIKFKLSLPHLKDNLQ 211
            TEV +L    R+CV L R R  +FI    +L AE     + A+ ++    ++  L D+L 
Sbjct: 914  TEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLWWDAINTLMNDETIQGLGDHLP 973

Query: 212  L 214
            L
Sbjct: 974  L 974


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 158  LASIKFKLSLPHLKDNLQLKEQLLQ 232
            LA+ K K  L HL   ++LKE +L+
Sbjct: 1390 LATNKLKNQLDHLNQEIRLKEDVLK 1414


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 68   LCVYLFRNRLQVFIIAMELTAEGKTPEY 151
            LC+  FR  L+  ++A    A    P+Y
Sbjct: 1626 LCIQFFRCNLEAVLVAFLEAASVNAPDY 1653


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 143 PEYMALASIKFKLSLPHLKDNL 208
           PEY      KF LSL H++ +L
Sbjct: 774 PEYSRKKDAKFHLSLSHIRISL 795


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 56  FCCRLCVYLFRNRLQVFIIAMELTAEGKTPEYMALASIKFKLSLPHLK 199
           F   LC Y+  +++   + +     E  TP + AL  I     +P L+
Sbjct: 244 FSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQALHRINMIECIPELQ 291


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 213 NCRLSFK*GKLSLNLMLANAIYSGVLPSAVSSIAIIKTC 97
           N   SF+   L  +L+     Y    PSAV S AII+ C
Sbjct: 18  NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQIC 56


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  YFATKLTEVIYLLFCCRLCVYL 82
           Y+A KL E++ L +C  +  +L
Sbjct: 68  YWAFKLVELLSLFYCAYVMYFL 89


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 120 NSQQKVKLLNIWH 158
           ++QQK+ LLNI+H
Sbjct: 506 SNQQKIVLLNIFH 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,009
Number of Sequences: 5004
Number of extensions: 11980
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)