Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A21
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 17  YFATKLTEVIYLLFCCRLCV-YLFRNRLQVFIIAMELTAEGKTPEYMALASIKFKLSLPH 193
           Y  T+ T  IYL F C  C+ +  +++ Q F +A      G        + + F L+L  
Sbjct: 66  YQMTRNTYFIYLSFICFFCLTFTHKHKGQYFNLAFPFLLYGLYTIAHVFSLLTFLLALQR 125

Query: 194 L 196
           L
Sbjct: 126 L 126


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
 Frame = +2

Query: 44  IYLLFCCRLCVYLFRNRLQV----------FIIAMELTAEGKTPEYMALAS 166
           ++L+F    CV+LF   +Q+          F+  ME+ A   TP +    S
Sbjct: 293 VFLIFQASSCVFLFAQSVQITNVGAFLVKRFVNTMEILAGAATPSFFFFTS 343


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 59  CCRLCVYLFRNRLQVFIIAMELTAEGKTPEYMALASIKFK 178
           C R    LF++ +++FI ++  T E KTP Y+   + +++
Sbjct: 311 CDRKIFTLFKS-IKIFIKSLIQTCEQKTPLYVFAQTTRYR 349


>AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical
           protein F58F6.6 protein.
          Length = 331

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
 Frame = +2

Query: 44  IYLLFCCRLCVYLFRNRLQV----------FIIAMELTAEGKTPEYMALAS 166
           ++L+F    CV+LF   +Q+          F+  ME+ A   TP +    S
Sbjct: 250 VFLIFQASSCVFLFAQSVQITNVGAFLVKRFVNTMEILAGAATPSFFFFTS 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,479,032
Number of Sequences: 27780
Number of extensions: 65325
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)