Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A20
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 29 1.0
02_05_1001 + 33423562-33424098 27 3.1
01_05_0197 + 19143582-19143618,19143814-19144523 27 4.1
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 5.5
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 5.5
01_06_0630 - 30723903-30724496 27 5.5
07_01_0501 - 3745447-3746244 26 7.2
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 9.6
11_01_0259 + 1981554-1982249 26 9.6
05_06_0054 + 25231531-25231590,25232111-25232215 26 9.6
04_04_0236 + 23825368-23825763,23826229-23828667 26 9.6
01_06_1034 + 33962813-33963802 26 9.6
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 152 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 286
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 296 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 192
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 118 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 258
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 179 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 292
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +2
Query: 35 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 127
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 164 HVCCLRTWSLLFRSAPIC 217
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
>07_01_0501 - 3745447-3746244
Length = 265
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 154 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 300
E+ R L E A H+L +AG+ D Y +S D DR A
Sbjct: 83 ETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIA 131
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 259 PFYMCQLGCRQICTADGCRTKEQAPSP*AAYVLEI-L*YSSCCH 131
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307
>11_01_0259 + 1981554-1982249
Length = 231
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 164 HVCCLRTWSLLFRSAPICCTNLPA 235
H C+ +W L+ R P+C LPA
Sbjct: 169 HEQCIFSWLLINRHCPLCRFPLPA 192
>05_06_0054 + 25231531-25231590,25232111-25232215
Length = 54
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 206 APICCTNLPASKLTHIKWFHSMRIWTLIGRTLIIE 310
A +CC+ + A+ + + IWTL+ +L I+
Sbjct: 18 AAVCCSTVAAAACATVPLNSCICIWTLLASSLAID 52
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 85 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAL 198
NHP +P ++C+ D + RE + T L P +
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKI 313
>01_06_1034 + 33962813-33963802
Length = 329
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 152 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 238
++L H C+ W + S P+C LP+S
Sbjct: 211 KHLYHAECIIPWLVQHNSCPVCRHPLPSS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,749
Number of Sequences: 37544
Number of extensions: 157067
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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