Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A20
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    36   0.006
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    29   0.94 
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   0.94 
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   0.94 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    27   2.9  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    27   2.9  
AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF039650-1|AAC14022.3|  607|Caenorhabditis elegans acetylcholine...    27   3.8  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   6.6  
AF025379-1|AAC14017.1|  602|Caenorhabditis elegans acetylcholine...    26   6.6  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   6.6  
Z81527-12|CAB04277.2|  487|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    26   8.7  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    26   8.7  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 124 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 300
           CY+ + +  R+ +A+ +P D  P L  CTH+L+    + AD         +L  D A   
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114

Query: 301 NYRAITNLKRQFPQLR 348
            YR +  LK    QL+
Sbjct: 115 MYRRVNKLKVTDTQLK 130


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 160 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAITNLK 327
           + R+ P  L+  ++ CTHL+Y S  I  DT    Y +  +    DID    N R    L+
Sbjct: 37  KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91

Query: 328 RQFPQLRV 351
           +  P  ++
Sbjct: 92  KYHPNAKL 99


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 247 CQLGCRQICTADGCRTKEQAPSP 179
           CQ  C+Q C    C T+  AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 247 CQLGCRQICTADGCRTKEQAPSP 179
           CQ  C+Q C    C T+  AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 FCTHLLYKSAGIQADTYKMVSLNENLDI 285
           F  +L  K  GI A  YK+VSLN  L++
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEV 538


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 FCTHLLYKSAGIQADTYKMVSLNENLDI 285
           F  +L  K  GI A  YK+VSLN  L++
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEV 534


>AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical
           protein Y48B6A.8 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 269 LSETILYVSAWMPADLYS 216
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF039650-1|AAC14022.3|  607|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 269 LSETILYVSAWMPADLYS 216
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 223 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 104
           C+ + C     AP    +Y      YSSCC+S+   C GY
Sbjct: 65  CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102


>AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical
           protein Y48B6A.7 protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 269 LSETILYVSAWMPADLYS 216
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 104 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 226
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>AF025379-1|AAC14017.1|  602|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 269 LSETILYVSAWMPADLYS 216
           +SE  LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 104 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 226
           +AK    AT  A+    +SE L+H   + TW    R+ P+  +N
Sbjct: 56  IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99


>Z81527-12|CAB04277.2|  487|Caenorhabditis elegans Hypothetical
           protein F35E12.10 protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 97  SPSSQSKVLCYYDSKSYIRESQARMLPTDL 186
           SP+ + + L  YD+++Y      +++PT++
Sbjct: 306 SPTHKKETLIQYDAQTYTSSQMPQVIPTNM 335


>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 85  NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDL 186
           N+PA P + +  L YY   S I+ES+ + +   L
Sbjct: 681 NNPAKPGAVTGQLTYYSFLSSIKESRYKPIGVQL 714


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 50  SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 166
           S G+W   + LP  Q HLVA    S T+ + A  +N  H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 50  SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 166
           S G+W   + LP  Q HLVA    S T+ + A  +N  H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 38  PWSPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISEN 157
           P+SP P + R  LR P T    V   KS++  +  + +EN
Sbjct: 18  PFSPIPKFSR--LRTPRTSREYVCPLKSTSPQSPSSSTEN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,690
Number of Sequences: 27780
Number of extensions: 128514
Number of successful extensions: 366
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)