Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A19
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    32   0.33 
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.43 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.57 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.76 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.3  
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    28   5.4  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   9.4  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   9.4  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 295 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 459
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204

Query: 460 IYYNFYQQLTTRYYFERLTNGLGSIPE 540
           ++ +     T  Y   R  +  GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 239 TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 334
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 200 LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 334
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 579 GIVTSLNRRVPREFRYGTQAVCKT 508
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 576 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 487
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 157 YEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 306
           Y++  +F V     +  YR K+   +    ++ N  +VK E+  VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 61  ARVHLNEGQFLYAYYIAVIQRNDTHGFV 144
           AR  L+EG  L  +Y+ ++++ DT+  V
Sbjct: 295 ARTILSEGGVLQVHYVKILEKGDTYEIV 322


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 352 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 263
           G+    LH     C  SW N H   P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,661
Number of Sequences: 28952
Number of extensions: 250849
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)