Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A18
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36805| Best HMM Match : GED (HMM E-Value=0.24) 30 0.89
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59317| Best HMM Match : APT (HMM E-Value=7.8) 28 3.6
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5) 28 3.6
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8) 28 4.7
SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8) 27 6.3
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 27 6.3
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 27 6.3
>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
Length = 377
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 134 QDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 283
+ V QV + ++ K G+ +D +I+N ++K V +LK Y KYY
Sbjct: 49 EGVGQVVIHRKFMKPGELFDFPVSIENGKSRKFVSNWLKKYPWLAYSKYY 98
>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 244
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 401 KDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHLKPAVLKKVDVNQF 456
>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
Length = 229
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 244
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 35 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 90
>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
Length = 279
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 244
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 108 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 163
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 113 KKVLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDNYTNKKAVEEFLKLYRI 262
++ +SLF+DVD+ D+ Y KI Y D+ + ID Y + F KL ++
Sbjct: 93 ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144
>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
Length = 62
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 43 QCGVTENVSLQDKRCRRSVCG 105
+C + +NV D+ CRRS CG
Sbjct: 29 KCHMEKNVIFDDRACRRSRCG 49
>SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)
Length = 337
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 122 LSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 283
++ + D++ + +K G+ +D +I+N ++K V +LK Y KYY
Sbjct: 24 IASYSPQDKLKFIENVWKPGELFDFRVSIENGKSRKFVLNWLKKYPWLAYSKYY 77
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 244
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 681 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 736
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKK 229
KD D V +QK +L + + + +++ K+ +DY VE ++ KK
Sbjct: 347 KDADIAPVPKQKPILDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKK 396
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 17 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 184
+G+I L + + V+ Y+FK K D +F +L + +DQ N ++ G+
Sbjct: 1370 SGIITLSREAPVNVWEYNFKVKATDGIFTATTDVLLDI---IDQNNHKPQFTNCGE 1422
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 244
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 392 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 447
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,905
Number of Sequences: 59808
Number of extensions: 295511
Number of successful extensions: 1527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -