Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A17
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0033 + 27820563-27823482,27823593-27823996 30 0.96
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 1.7
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 28 2.9
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 28 3.9
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 6.8
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 6.8
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 27 6.8
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 9.0
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452... 27 9.0
07_03_0154 + 14509979-14512033 27 9.0
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 69 GVTENVSLQDKRCRRSVCGAPEKGFIPFP 155
GV N++L+ R +CG+P G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 367 SRTSGKEQ*PLPLASGRRWRTHSTWED 287
SRT G P P S RRWR H +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 445 RTRTVPHLGAHERKRHSCRRFQSL*HSRTSGKEQ*PLPLASGR 317
+T ++PHL H R+R RRF L + S PLP AS +
Sbjct: 28 QTVSIPHLSPHTRRRRQ-RRFLRLASAAASSPP--PLPAASAQ 67
>06_03_0499 +
21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 414 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 268
+S +G + FK+ +++E K + L EDG++++ K DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 27 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 170
PS + A + Q GV +VSL+ ++ + +K + PF C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 342 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 226
S FP + E GE+ V GK+ D + SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 106 VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKKAVEEF 264
VD V+ Q+K + +++ + +++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 265 LKLYRIGY 288
LKL +G+
Sbjct: 711 LKLPEMGF 718
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 26.6 bits (56), Expect = 9.0
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 121 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA--VEEFLKLYRIGYLP 294
V+ + +L + +V ++ KIG D D + +Y+ K+ VEE + +R +L
Sbjct: 1230 VDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLN 1289
Query: 295 KYYEFSIFYQ--KLREEAIA 348
+ E +F Q KL + IA
Sbjct: 1290 RLDEMIVFRQLTKLEVKEIA 1309
>07_03_0475 +
18544637-18544772,18544925-18545031,18545114-18545295,
18545467-18545599,18545708-18545920
Length = 256
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 235 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIAL 351
Y NK V K+ P Y EF I+YQ+ ++ IA+
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIAV 182
>07_03_0154 + 14509979-14512033
Length = 684
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 27 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRP 167
PSSS P A + N KR +S +PE+G +P P P
Sbjct: 7 PSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERGPLPLPAAAP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,872,375
Number of Sequences: 37544
Number of extensions: 205487
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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