Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A16
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 31 0.065
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 0.60
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.60
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 1.1
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 1.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 2.4
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 25 3.2
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.2
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 3.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 3.2
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.3
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 25 4.3
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 23 9.8
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 23 9.8
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 9.8
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 30.7 bits (66), Expect = 0.065
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 246 SFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVSSITNVKLLDLI 76
SF S+++ N+ S+ SC S S M++S F C + S +K L I
Sbjct: 256 SFLDLSIDIENHTSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKI 312
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 0.60
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 246 SFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNST 121
S S SLN T + + S S + S A++ S S LNST
Sbjct: 194 SLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 0.60
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = -2
Query: 240 TSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVSSITNVKL 88
TS S + +++I+ IS S S+I STFS SIL+S+ S T++ +
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIP---STFSSVSSILSSSTSSPSSTSLSI 594
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 35 PILKCLLILVHLNLMRSSSLT 97
P+L+C+ I HL+ +R+SSL+
Sbjct: 507 PVLRCMDIQFHLDRLRNSSLS 527
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 1.4
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 89 SLTFVIDDTRSVLFNIEQVKENVDAIMDIVLKEKSHEIKDMLLVTFNDPDVKLRVKTSSR 268
SLTF D SVL + E V++ + ++ ++ S ++ D ++ DP + +K R
Sbjct: 325 SLTFCHD---SVLQDSE-VRQKIAGLVSLI--HNSPKMFDETMLFAGDPSISTALKEDFR 378
Query: 269 QEFKSV 286
+ FK+V
Sbjct: 379 EHFKTV 384
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 146 KENVDAIMDIVLKEKSHEIK 205
KEN +A+M+ VLK K + IK
Sbjct: 724 KENFEALMNSVLKVKENSIK 743
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 68 LNLMRSSSLTFVIDDTRSVLFNIEQVKEN 154
LN + ++ + IDD V IE+VKE+
Sbjct: 43 LNELEGPAVIYKIDDDAGVSLGIEEVKES 71
>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 3.2
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 189 FSLSTISMMASTFSFTCSILNSTDLVSSITNVKLLDLIKLRCTKINRHF-NIGNILRRK 16
F + TIS + ++ CS+ ++ +SI+N + + K+ R+F ++G I K
Sbjct: 30 FDMITISTIFKLYNQICSLSSTDRKKTSISNKLQQEFCIMDINKVGRNFISLGKIRSSK 88
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 141 CSILNSTDLVSS-ITNVKLLDLIKLRC 64
C ILN TDL+SS +V ++K+ C
Sbjct: 214 CLILNKTDLISSEALSVVRQTILKINC 240
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 3.2
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Frame = -2
Query: 258 VFTLSFTSGSLNVTNNISLISCDFSLSTISMMAS-TFSFT-CSILNSTD--------LVS 109
V +S + V I I+ F S I + + T SILNS D L
Sbjct: 108 VIEVSLSLNLSEVVYMIQFITLCFQFSNIEKLRKLVYQLTNISILNSLDNLDKVKYLLHD 167
Query: 108 SITNVKLLDLIKLRCTKINRHFNIGNILRRKIHSM 4
S + K D K + I F + N+L R IHS+
Sbjct: 168 SSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSL 202
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 4.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 261 LVFTLSFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTD 118
+V S TS S+N + S + + ST S+ +S F+ T S NST+
Sbjct: 331 VVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNSTN 378
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 204 LISCDFSLSTISMMASTFSFTCSILNSTDLVSSITN-VKLLDLIKLR 67
L+SC L+TI F CS L + + N ++ L L+++R
Sbjct: 94 LVSCCLQLATIYEAEQNFELLCSSLEAVEKHGHFENDLEQLLLLRIR 140
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 228 LNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVS 109
L V+ I+ I+C L S M S S +NS+ S
Sbjct: 115 LGVSKPITFIACILQLGGTSFMESELQTKLSTINSSPFKS 154
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 190 FLFEYYIHDGVNIFLHLFDIEQYRSSI 110
F+++ HD + ++ FD+ YR I
Sbjct: 45 FMYQSVGHDVIPLYAECFDLPLYREKI 71
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 95 TFVIDDTRSVLFNIEQVKENVDAI 166
TF+ + R LF ++ ++EN+D +
Sbjct: 3 TFIKNWKRITLFQVKAIEENIDRL 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,344
Number of Sequences: 5004
Number of extensions: 23680
Number of successful extensions: 104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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