Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A16
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 30 0.55
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 27 2.9
11_06_0513 + 24466131-24469487 27 3.9
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839... 27 3.9
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 27 5.1
06_03_0536 + 21906583-21908037 26 6.7
01_06_1576 + 38375773-38376281,38376384-38376705,38378177-38378467 26 6.7
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 26 8.9
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 26 8.9
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -2
Query: 141 CSILNST--DLVSSITNV-KLLDLIKLRCTKINRH 46
CS++ S D++ S TN+ ++L++LRC IN H
Sbjct: 161 CSVMESLSHDIIISSTNITSFVELLQLRCLDINGH 195
>04_03_0819 + 20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 101 VIDDTRSVLFNIEQVKENVDAIMDIVL 181
VIDD+ +F IEQ+KE M++VL
Sbjct: 1221 VIDDSFFGVFTIEQIKEAAAKCMNVVL 1247
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.1 bits (57), Expect = 3.9
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -2
Query: 150 SFTCSILNSTDLVSSITNVKLLDLIKLRCTKI 55
+F C + N+ + +T ++++ LI L+C+ +
Sbjct: 880 TFPCWMANTNPQLKKLTQIRIIRLINLKCSSL 911
>01_05_0559 +
23281408-23282457,23282580-23282942,23283938-23283991,
23284088-23284156
Length = 511
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -2
Query: 216 NNISLISCDFSLSTISMMASTF------SFTCSILNSTDLVSSITNVKLLDLIKLRCTKI 55
++ + S S +TIS+ +STF S T +I ST +SI++ + +++L +
Sbjct: 378 SSTTFTSSSISTTTISIASSTFSPAAVSSTTIAIAASTISTASISSSAIASVLQLAAAAV 437
Query: 54 NRHFNIGNI 28
R F G +
Sbjct: 438 LRGFTGGQV 446
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 26.6 bits (56), Expect = 5.1
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = -2
Query: 216 NNISLISCDFSLSTISMMASTFSFTCSILNSTDLVSSITNVKLLDLIKLRCTKINRHFNI 37
NNI ++ IS + S F + NS D+V N K +K C K +N
Sbjct: 734 NNIRSNENSAGINQISSIFSNRVFQ-DVTNSPDVVFLGEN-KFPQTVKESCVKTEEIYNA 791
Query: 36 GNILRRKIHSM 4
N L R H M
Sbjct: 792 TNNLSRYTHGM 802
>06_03_0536 + 21906583-21908037
Length = 484
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 180 STISMMASTFSFTCSILNSTDLVSSITNVKLLDLIKLRCTKINRHFNIGNIL 25
S + S F+ SILN ++S + L+ +I +K+ R GN L
Sbjct: 392 SNLVWTESLFALLYSILNQDICLTSSSTENLVSVIDEMASKLPRSLKFGNFL 443
>01_06_1576 + 38375773-38376281,38376384-38376705,38378177-38378467
Length = 373
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 161 AIMDIVLKEKSHEIKDMLLVTFNDPDVKLRVKTSSRQEFKSVLSSIVSGNYFNNDCPE 334
A M V ++ E+K++ L ++ L V+ +EF + SSI+ NY+ CPE
Sbjct: 167 APMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYY-PPCPE 223
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 182 KEKSHEIKDMLLVTFNDPDVKLRVKTSSRQEFKSVLSSIVS 304
K+KSH+ D + FN D++ ++ S + KS+L S +S
Sbjct: 670 KKKSHKHVDSSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMS 710
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = -2
Query: 243 FTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTD 118
F +LN+ ++ + C FS T ++ + F C+ + D
Sbjct: 401 FQCRALNINEDLGQVKCVFSDKTGTLTQNKMEFRCASVGGVD 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,341
Number of Sequences: 37544
Number of extensions: 123373
Number of successful extensions: 385
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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