Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A16
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.4  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    20   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 89  SLTFVIDDTRSVLFNIEQVKENVDAIMD----IVLKEKSHEIKDM 211
           +L+ VID    ++  +E V   VD +MD    + L+E +   KD+
Sbjct: 357 NLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDL 401


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 327 QSLLK*LPDTIELNTLLNS*RLLVFTLS 244
           + LLK +PD   LNT L+S +LL F ++
Sbjct: 386 RELLKKIPDLRTLNT-LHSEKLLAFKMT 412


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 282 LLNS*RLLVFTLSFTSGSLNVTNNIS-LISCDFSLSTI 172
           L+NS  LLVF +   SG   VT  IS L+S    L TI
Sbjct: 226 LINSVALLVFYVPSESGE-KVTLGISALLSMTVFLMTI 262


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 188 KSHEIKDMLLVTFNDPDVKLRVKTSSRQEFKSVLSSIVSGNY 313
           K   +KD L+   NDPD     K  S QE++ +  +++  N+
Sbjct: 186 KKGGLKDNLIPDKNDPD----SKECSNQEYEIMKDNLLLYNH 223


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 202 NLMRFLFEYYIHDGVNIFLHLFDIE 128
           N  + LF  Y     N F+ +FD++
Sbjct: 366 NFQQLLFSKYDAKKRNFFITMFDLD 390


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 211 VISYIQ*SRCETESKDQQS 267
           VI  I  S+CE  S D+QS
Sbjct: 21  VILLIIPSKCEAVSNDRQS 39


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 264 LLVFTLSFTSGSLNV 220
           L VFTL+ T+G+L +
Sbjct: 486 LWVFTLACTAGTLGI 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,877
Number of Sequences: 438
Number of extensions: 1576
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)