Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A14
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 61 9e-11
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 61 9e-11
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 52 7e-08
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 48 9e-07
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 30 0.26
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 26 4.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 4.2
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 26 4.2
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 26 4.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 25 5.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 7.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 9.6
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 61.3 bits (142), Expect = 9e-11
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Frame = +3
Query: 30 IGVPISNNYVYLL-----DENMRCVREGEPGEVCVAGFNLARGYVRGKD--PHRFIHNPH 188
+GVP+ + + ++ D + EG GEVC+AG L+ GY+ + F+ +
Sbjct: 526 VGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIAGPQLSSGYINRPEINAKAFVEVQY 585
Query: 189 NTHPNFAKLYRTGDFGILDKGVILYAGR--ADSQVKIRGHRVDLQEVDHAVSTIPCVDNC 362
N +YRTGD G + G + GR D Q+KIRG R+++ E++ ++ P VD+
Sbjct: 586 NEQT--LSIYRTGDLGRIINGKLYIFGRIAGDMQIKIRGRRIEIGEIESKLA--PSVDS- 640
Query: 363 VVLCYGVESSNPEILAFVTINPEARMSAKNIEAELTSSLTDYMIP-QVIEIETVPVLVNG 539
+E ++AF + E ++ K+ E+ L S +M P + + + P L +G
Sbjct: 641 ----LAIEKIGDNLVAFY-VGDEMKL-RKHAESHLAS----WMCPTKYVGLPGFPRLASG 690
Query: 540 K 542
K
Sbjct: 691 K 691
Score = 54.8 bits (126), Expect = 8e-09
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Frame = +3
Query: 30 IGVPISNNYVYLLDENMRC-VREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNF 206
IG P N Y+L + + V G GE+C+ G +A+GY+ P + +
Sbjct: 3035 IGPPFPNCSTYILSKETKVPVLLGGLGEICMGGNQVAKGYLNL--PEQTDAKFYFDRRFN 3092
Query: 207 AKLYRTGDFGIL--DKGVILYAGRADSQVKIRGHRVDLQEVDHAVST 341
++Y TGD G L D + + GR D Q+K+RG R+++ E++ + +
Sbjct: 3093 DRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIGEINAVIKS 3139
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 61.3 bits (142), Expect = 9e-11
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Frame = +3
Query: 63 LLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNFAK--LYRTGDFG 236
+LD+ + +G+ GE+CV G N+ +GY ++NP +F K +RTGD G
Sbjct: 340 ILDQKGNEMPQGKEGEICVRGINVTKGY---------LNNPAANKSSFTKDRFFRTGDEG 390
Query: 237 ILDK-GVILYAGRADSQVKIRGHRVDLQEVDHAVSTIPCVDNCVVLCYGVESSNPEILAF 413
LDK G + GR V G ++ E+D + P V V E +I A
Sbjct: 391 KLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQA- 449
Query: 414 VTINPEA--RMSAKNIEAELTSSLTDYMIPQVIEI-ETVPVLVNGKV 545
INP A ++ K + L + + IP+ + +P GKV
Sbjct: 450 -AINPVAGKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIPKTATGKV 495
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 51.6 bits (118), Expect = 7e-08
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Frame = +3
Query: 24 VPIGVPISNNYVYLL---DENMRCVREGEPGEVCVAGFNLARGYVRGK------------ 158
+P G + N + ++ D N C GE GE+ + LA GY+
Sbjct: 635 IPAGRGMKNVQLLVINRFDTNKIC-GIGEVGEIYLRAGGLAEGYLGNDELTSKKFLKSWF 693
Query: 159 -DPHRFI-HNPHNT--HPNFA----KLYRTGDFG-ILDKGVILYAGRADSQVKIRGHRVD 311
DP +F+ P N P + ++YR+GD G L G + +GRAD Q+KIRG R++
Sbjct: 694 ADPSKFVDRTPENAPWKPYWFGIRDRMYRSGDLGRYLPTGNVECSGRADDQIKIRGFRIE 753
Query: 312 LQEVDHAVSTIPCVDNCVVLCYGVESSNPEILAFVT---INPEARMSAKNIEAELTSSLT 482
L E++ +S P V + L + P ++A++ +N + SA E + + L
Sbjct: 754 LGEINTHLSRHPNVRENITLVRRDKDEEPTLVAYIVPQGLNKDDFDSATESEDIVVNGLK 813
Query: 483 DY 488
Y
Sbjct: 814 KY 815
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 48.0 bits (109), Expect = 9e-07
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Frame = +3
Query: 135 ARGYVRGKDPHRFIHNPHNTHPNFAKLYRTGDFGILDK-GVILYAGRADSQVKIRGHRVD 311
AR RG D R+I +P F Y TGD DK G I GR D V I GHR+
Sbjct: 484 ARTVWRGHD--RYIDTYLKPYPGF---YFTGDGATRDKDGYIWIRGRVDDVVNISGHRLS 538
Query: 312 LQEVDHAVSTIPCVDNCVVLCYGVESSNPEILAFVTINP--EARMS-AKNIEAELTSSLT 482
E++ A+ + V V+ E + + AF+ + P EA + K + + S++
Sbjct: 539 TAEIEAALLSHDAVAESAVVGVHDELTGQAVNAFILLKPGYEATVELEKELIMAVRSTIG 598
Query: 483 DYMIPQVIEIETVPVLVNGKV 545
+ P+ + +P +GK+
Sbjct: 599 PFASPRKLIFSDLPKTRSGKI 619
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.26
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = -1
Query: 410 RQNLGITAFHAVAQNDTIIHTRDSRDSMIYLLQVNTVTPYLDLRVSTTRIQDHAF--IQD 237
++NLGI + + + +T+I+ R+ + ++ + P L + + AF ++D
Sbjct: 155 KRNLGIGSLYKESSTNTVIYRLRRREHLKKIIDIFDQFPLLTKKYWDYYLFKKAFLILED 214
Query: 236 AEITSAIQFGKIRVSVMRVMDEAMRIFTAHISSSKIETSHTHLTGFTFPNASHILIQK-- 63
A + S + K+ +R+ ++++ ++ ++ K T + L GF S L+QK
Sbjct: 215 ANLNSFEKNSKL--EEIRIEKKSLKQYSP-VNLEKYLTK-SWLIGFIEAEGSFYLLQKSP 270
Query: 62 VNVIVRYRYTNRY 24
V +I + T Y
Sbjct: 271 VRIIHGFEITQNY 283
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 36 VPISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIH-NPHNTHPNFAK 212
VP+S + + R GE GE+ + A + + DP + N N+
Sbjct: 1272 VPVSTQLAIVNPDTRELCRVGEYGEIWMRSSANAISFFQSTDPVDMMRFNATNSDGFLGN 1331
Query: 213 LY-RTGDFGIL 242
Y RTGD G L
Sbjct: 1332 GYVRTGDLGFL 1342
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 367 FCATAWKAVIPRFWRLSQSTQKRECPLK 450
+ ATA K I R W++ ++ ++RE LK
Sbjct: 200 YLATAGKDAIIRVWKVIETPERRETLLK 227
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 432 ARMSAKNIEAELTSSLTDYMIPQVIEIETVPVLVNGKV 545
+R SAKN+E E T +L D+ ++ + P+ G++
Sbjct: 213 SRSSAKNLEKESTMNLDDHAPREMFDCLDKPIPWRGRL 250
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 168 RFIHNPHNTHPNFAKLYRTGDFGILDKGVILYAGRADSQVKIRGHRVDLQEVDH 329
R+I HN FA + G+ D+G+ Y ++ G VDL V H
Sbjct: 165 RYITLTHNCDNPFATAASSITGGLPDRGLSAYGIECIFEMNRLGMMVDLSHVSH 218
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 76 ICDAFGKVNPVRCVWL 123
ICDA +VNP+ C +L
Sbjct: 281 ICDANSRVNPITCEYL 296
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 186 HNTHPNFAKLYRTGDFGILDKGVIL 260
H HPN++ Y + L+KG ++
Sbjct: 340 HAMHPNYSSRYENSNTPFLNKGTVI 364
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -1
Query: 407 QNLGITAFHAVAQN---DTIIHTRDSRDSMIYLLQVNTVTPYLDLRVSTTRIQDHAFIQ 240
Q + F A++QN + + H R+S++ + ++VN T Y+ + +++ ++ I+
Sbjct: 100 QEYALEEFQALSQNFEKNLVQHRRNSQNKLKCAMEVNIKTNYIVILLTSINLKKLKMIE 158
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 174 IHNPHNTHPN 203
IHNPH THP+
Sbjct: 300 IHNPHPTHPS 309
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -1
Query: 149 HISSSKIETSHTHLTGFTFPNASHILIQKVNVIVRYRYT 33
++ ++K+ S ++ G T P H L+Q V++ +R++
Sbjct: 581 NLLTNKVVQSDNNVKGGTLPALVHYLVQNVHLNKDFRHS 619
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 SRVWIIVSFCATAWKAVIPRFWRLSQSTQKRE 438
+++W+I SFCA + F L S +RE
Sbjct: 845 AKMWLISSFCAMKTLICLRGFLNLKPSELERE 876
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,705
Number of Sequences: 5004
Number of extensions: 53173
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -