Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A13
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0289 - 22053561-22055666,22055745-22055771                       29   1.2  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   3.7  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    27   4.9  
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229...    27   6.5  
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511     27   6.5  
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    26   8.6  

>09_06_0289 - 22053561-22055666,22055745-22055771
          Length = 710

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 232 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 324
           VRW  EW  + LV+ + GL+W  ++A   ++
Sbjct: 40  VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 207
           N++G  + RG+V  +  V++ V YE +  EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 163 KVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINNKGLK-WCQIMATRFKRIYENK 339
           KV +FVV E++    I+    + +RW V  IA     +    K   Q+  TR + +Y   
Sbjct: 432 KVNSFVVNEEVTAAQIKAEMEKTLRWLVP-IANNTTKSEVNCKPTGQMDLTRIETLYHAD 490

Query: 340 RTGMDIHLQYLLA 378
           +   + H+  L+A
Sbjct: 491 KEKTETHILELVA 503


>02_04_0221 -
           21021886-21022144,21022227-21022345,21022681-21022920,
           21023064-21023171,21023272-21023331,21023991-21024066,
           21024155-21024360,21024722-21024784,21024925-21025012,
           21025515-21026015,21027206-21027603
          Length = 705

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 196 LKEHIRLF-EARRVRWTVEWIAKRLVINNKG 285
           + +H+  F E R  R +  W+A  +V+NNKG
Sbjct: 441 MAKHVTSFAEIRSFRGSPYWMAPEVVMNNKG 471


>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
          Length = 383

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -3

Query: 326 IRLNLVAMI*HHLRPLL-----LITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTF 162
           +R++L     H+LRPL       +  L A +    RTR A   L+      SYTT A   
Sbjct: 106 LRISLYVPDSHNLRPLAAYLRDFVKGLAAKYPFWNRTRGADHFLVACHDWGSYTTTAHGD 165

Query: 161 LTNST 147
           L  +T
Sbjct: 166 LRRNT 170


>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 PSWYTKTSLKNILGSLKHVESAGRSNG*PKGLLSITKA 286
           P WY++  +KN+   L+ +    RS G   GL  +TKA
Sbjct: 57  PVWYSQQEVKNL---LQRISEGNRSTG---GLTFVTKA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,327
Number of Sequences: 37544
Number of extensions: 178881
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)