Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A13
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    30   0.63 
AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    29   0.83 
Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    27   4.5  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    27   4.5  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    27   4.5  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   5.9  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      26   7.8  

>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 357 DIHSSSFVFVYPFESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKD 193
           +I +  FVFV P+ +  +D  P+EA  +D +     F+     T       FF D
Sbjct: 283 EIKNEEFVFVIPWLAHQNDHYPWEAANVDKQEVKLAFENTIIITAHGYDKKFFDD 337


>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = -3

Query: 281 LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 144
           ++++ ++L +H+ + + ++A K    SLR + +TTK   F+T + F
Sbjct: 58  VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102


>Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical
           protein C34C12.9 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 227 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 96
           R+S     SLR    T   ST  T S+ P + + P MF N+++C
Sbjct: 77  RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119


>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 318 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 172
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 318 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 172
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 318 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 172
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 212 GSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTK 340
           GS KH           +   S T+++N + +W LDSNG  +++
Sbjct: 140 GSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSR 182


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 159 YKFNVPPY--FSKTNDVPKQ*EML 94
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 159 YKFNVPPY--FSKTNDVPKQ*EML 94
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,839
Number of Sequences: 27780
Number of extensions: 165362
Number of successful extensions: 434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)