Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A12
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0245 + 1916718-1917443,1917534-1917719 30 0.59
07_01_0294 + 2130956-2131087,2131495-2131950 29 1.0
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 28 1.8
01_05_0809 - 25422832-25422919,25423887-25424443 28 2.4
01_06_1411 + 37127098-37128279 27 3.1
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179... 27 5.5
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 27 5.5
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 26 7.2
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 26 7.2
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 26 7.2
12_01_0451 + 3565046-3565257,3565427-3565604 26 9.6
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 26 9.6
01_07_0361 - 43058132-43058164,43058309-43058374,43058712-430587... 26 9.6
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 26 9.6
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 198 SPAVPSCRCSRTPRCWCSPCGRRVPDLRERAP 293
S S R RTP+ C+P RR+ +R R P
Sbjct: 85 SSTTTSARTPRTPKTPCTPTARRLCGVRSRTP 116
>07_01_0294 + 2130956-2131087,2131495-2131950
Length = 195
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 292 GARSRRSGTRRPHGEHQQRGVREHRHDGTAG 200
G R+RRSG RR G Q HR G+ G
Sbjct: 147 GRRARRSGDRRGGGGGQVEATLGHRRGGSGG 177
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 246 CSPCGRRVPDLRERAPGCTKDQRWSPLQVAAG 341
CSP VP P + W PL+ AAG
Sbjct: 7 CSPALEPVPTPSNPDPSSISQEAWDPLEAAAG 38
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 298 QPGARSRRSGTRRPHGEHQQRGVREHRHDGTAG 200
QPG + R RP + Q+ G R HRH G G
Sbjct: 64 QPGRCASRGAPWRPSSQ-QRDGRRHHRHHGGVG 95
>01_06_1411 + 37127098-37128279
Length = 393
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 222 CSRTPRCWCSPCGRRVPDL 278
C+R P C+C P G VP L
Sbjct: 224 CARRPNCFCHPYGDGVPIL 242
>07_03_0164 +
14616156-14616225,14616409-14616477,14617672-14617902,
14618394-14618557,14618795-14618935,14619632-14619691,
14620358-14620522,14620676-14620732,14621084-14621148,
14622235-14622358,14622469-14622606,14622705-14622830
Length = 469
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 23 IRTAISLDCSAALRKSVIMAESGPTLCSVLDPLESL 130
+ A+S+D S+ L I A G T S +DPL L
Sbjct: 205 VSEALSIDLSSGLIPFFICATVGTTSSSAVDPLPEL 240
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 307 SFVQPGARSRRSGTRRPHGEHQQRGVREHR 218
S ++ G+ SRRS +R P Q+RG HR
Sbjct: 295 SSMERGSSSRRSLSREPSSAVQERGHGPHR 324
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 307 SFVQPGARSRRSGTRRPH 254
SF PG S+R+G RPH
Sbjct: 541 SFRDPGGSSQRAGASRPH 558
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 322 GDHRWSFVQPGARSRRSGTRRPHGEHQQRGVREHRHDGTAGE 197
G + +F + G+ R G+ P G+H +RG R+H GE
Sbjct: 765 GSNANNFGRGGSNIGRGGSY-PRGDHGRRGGRDHGDPPPEGE 805
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 207 VPSCRCSRTPRCWCS---PCGRRVPDLRERAPGCTKDQRWS 320
VP+ RC + R W S P R+ RER ++ WS
Sbjct: 100 VPATRCPTSSRAWSSGGLPSPRKAARRRERELKIYMNESWS 140
>12_01_0451 + 3565046-3565257,3565427-3565604
Length = 129
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 298 QPGARSRRSGTRRPHGEHQQRGVREHRHDG 209
QPG +R G RR HG + GV RHDG
Sbjct: 78 QPG---QRGGGRR-HGGERLGGVLRRRHDG 103
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 243 WCSPCGRRVPDLRERAP 293
WC C R P+L E AP
Sbjct: 70 WCGHCKRLAPELDEAAP 86
>01_07_0361 -
43058132-43058164,43058309-43058374,43058712-43058794,
43058902-43059014,43059311-43059428,43059935-43060040,
43060128-43060205,43060322-43060372,43060461-43060521,
43060991-43061115,43061671-43061760,43061886-43061965,
43062060-43062489
Length = 477
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +3
Query: 264 RVPDLRERAPGCTKD----QRWSPLQVAAG 341
R DLR+R PGC+ D Q + P +VA G
Sbjct: 260 RQQDLRKRFPGCSSDMEPGQCFFPQEVAKG 289
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 292 GARSRRSGTR--RPHGEHQQRGVREHRHDG 209
G + R G R RP G ++RG R+ R DG
Sbjct: 314 GGAADRPGRRKGRPKGRRRRRGWRDRRGDG 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,780,455
Number of Sequences: 37544
Number of extensions: 115141
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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