Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A12
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.79 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   0.79 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   0.79 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 345 LLQQPLEGVTIVGLLYSLEHVLVDPELDGR 256
           +LQ   +G   +G+L+++ +  +DP+ D R
Sbjct: 795 VLQCEAQGEKPIGILWNMNNKRLDPKSDSR 824


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 286 VLQAVQKTNDGHPFKWL 336
           +L+A +++N   PF+WL
Sbjct: 212 ILEAARRSNLSQPFQWL 228



 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 47  CSAALRKSVIMAESGPTLCSVLDPLESLIY 136
           CS      +I  + G T C V D  E   Y
Sbjct: 449 CSLPCEPGMIKKQQGDTCCWVCDQCEEYEY 478


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 286 VLQAVQKTNDGHPFKWL 336
           +L+A +++N   PF+WL
Sbjct: 302 ILEAARRSNLSQPFQWL 318



 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 47  CSAALRKSVIMAESGPTLCSVLDPLESLIY 136
           CS      +I  + G T C V D  E   Y
Sbjct: 539 CSLPCEPGMIKKQQGDTCCWVCDQCEEYEY 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,309
Number of Sequences: 438
Number of extensions: 859
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)