Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A10
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 52 1e-07
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 31 0.21
At1g55980.1 68414.m06421 expressed protein 31 0.21
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 30 0.48
At1g50080.1 68414.m05618 hypothetical protein 28 1.9
At3g52480.1 68416.m05771 expressed protein 27 4.5
At5g17700.1 68418.m02074 MATE efflux family protein similar to r... 27 5.9
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put... 27 5.9
At2g27280.1 68415.m03278 hypothetical protein 27 5.9
At1g52990.1 68414.m05997 thioredoxin family protein similar to S... 27 5.9
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 26 7.8
At4g23490.1 68417.m03384 fringe-related protein + weak similari... 26 7.8
At4g11350.1 68417.m01831 fringe-related protein various hypothet... 26 7.8
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen... 26 7.8
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 26 7.8
At1g12550.1 68414.m01455 oxidoreductase family protein similar t... 26 7.8
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 52.4 bits (120), Expect = 1e-07
Identities = 33/114 (28%), Positives = 59/114 (51%)
Frame = +2
Query: 47 EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 226
+ VG+VG+G +G A L A+ G V L D ++ A A I +K GL+ +
Sbjct: 5 KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64
Query: 227 NADEQFQCVKGTCDLAIAVXDAIFVQECVPENLELKKKVFQNLDNVVDDNTILS 388
D+ ++ T +L + A + E + E+ ++KKK+F++LD + + IL+
Sbjct: 65 -GDDAMHRLRLTSNLE-DLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILA 116
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 14 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
+R M+S + KV ++GSG+ G A A G VT+FD
Sbjct: 10 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 14 LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
+R M+S + KV ++GSG+ G A A G VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 30.3 bits (65), Expect = 0.48
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 50 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
K+G +G+G++GRS GY VT+F+
Sbjct: 39 KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67
>At1g50080.1 68414.m05618 hypothetical protein
Length = 91
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 189 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 19
FNC L+ AS I + + + NN+ H+ P PTI D + + T
Sbjct: 18 FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74
>At3g52480.1 68416.m05771 expressed protein
Length = 209
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 282 TAIAKSQVPFTHWNCSSAFRFPLRSPSF 199
T I+ +V F+H+N ++ F P SP F
Sbjct: 159 TDISDDEVDFSHYNQTTPFSTPCASPPF 186
>At5g17700.1 68418.m02074 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 497
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 44 SEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQL 187
S KV +V S +IG + L + G Q++ + ++DA+AD+ + L
Sbjct: 336 SIKVVLVVSAVIGVICSALCLAFGGQISYLFSDSQAVSDAVADLSIVL 383
>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 889
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 197 EKDGLLRGNLNADEQFQCVKGTC 265
EKDGL L+ DEQ +C G+C
Sbjct: 485 EKDGL---KLSVDEQIRCFPGSC 504
>At2g27280.1 68415.m03278 hypothetical protein
Length = 427
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 134 DVVEKQITDAIADIKVQLKTLEK 202
D EK+ITDA+ K +L+ EK
Sbjct: 41 DTAEKEITDAVTTAKERLRETEK 63
>At1g52990.1 68414.m05997 thioredoxin family protein similar to
SP|P48384 Thioredoxin M-type, chloroplast precursor
(TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
Thioredoxin
Length = 313
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 354 KFWNTFFLSSKFSGTHSCTKIASXTAIAKSQVPFTHW---NCSSAFRFPL 214
K W F S++F TH + T + K+ T W NC F +P+
Sbjct: 143 KSWIPSFTSTEFIFTHREQNQCADTLVKKAIKSSTQWSLFNCCPHFLYPI 192
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 68 SGLIGRSWAMLFASVGYQVTLFDV 139
S L+ SW +L AS G V LFDV
Sbjct: 3 SNLVEPSWRLLAASGGDTVKLFDV 26
>At4g23490.1 68417.m03384 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 526
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 309 ASRKIWNSKRKYSKIW 356
AS K+W +++Y KIW
Sbjct: 120 ASSKLWKQRKEYIKIW 135
>At4g11350.1 68417.m01831 fringe-related protein various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 489
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 309 ASRKIWNSKRKYSKIW 356
AS K+W +++Y KIW
Sbjct: 98 ASSKLWKQRKEYIKIW 113
>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
hydroxypyruvate reductase identical to hydroxypyruvate
reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
Cell Physiol 1997 Apr;38(4):449-55)
Length = 386
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 41 KSEKVGIVGSGLIGRSWAMLFASVGYQVTL--FDVVE 145
K + VG++G+G IG ++A + G+++ L FD+ +
Sbjct: 164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYFDLYQ 199
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 26.2 bits (55), Expect = 7.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Frame = +2
Query: 122 VTLFDVVEKQITDAIADIKVQLKTLEKD-GLLR-------GNLNAD--EQFQCVKGTCD 268
V F E +T I D+K QLK LE++ G LR GNL E+ + VKG D
Sbjct: 38 VNKFGNSELGLTSRIEDLKCQLKNLEQEIGFLRARNAGLAGNLEVTKVEEKERVKGLMD 96
>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
glyoxylate reductase from Homo sapiens (gi:6002730);
contains Pfam D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain PF02826
Length = 323
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 26 MASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQ 151
+ SK ++VGIVG G IG A S G ++ +KQ
Sbjct: 146 LGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQ 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,692
Number of Sequences: 28952
Number of extensions: 171458
Number of successful extensions: 610
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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